RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TRAPPC5Q8IUR0 188 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 ARIH2OSQ8N7S6 290 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 TEX47Q8TBZ9 253 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 OR5P2Q8WZ92 322 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 KLK6Q92876 244 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 HYLS1Q96M11 299 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 ICKQ9UPZ9 632 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 NCKAP1Q9Y2A7 1128 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 ACADMP11310 421 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 CCT3P49368 545 aaKnown RBP21.05■□□□□ 0.96
TRIM28-202ENST00000341753 ERVFC1P60507 584 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 SLC30A6Q6NXT4 461 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 TBC1D19Q8N5T2 526 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 BMPERQ8N8U9 685 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 BBS1Q8NFJ9 593 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 SPRYD4Q8WW59 207 aaPredicted RBP21.05■□□□□ 0.96
TRIM28-202ENST00000341753 TM4SF18Q96CE8 201 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 SGPP1Q9BX95 441 aa21.05■□□□□ 0.96
TRIM28-202ENST00000341753 CHP2O43745 196 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 LZTS3O60299 673 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-202ENST00000341753 TBX6O95947 436 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-202ENST00000341753 SRP9P49458 86 aaKnown RBP21.04■□□□□ 0.96
TRIM28-202ENST00000341753 CDH11P55287 796 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 ZBTB37Q5TC79 503 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 SLC27A4Q6P1M0 643 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 GLRX5Q86SX6 157 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 KLBQ86Z14 1044 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 SPERTQ8NA61 448 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 OR6C4Q8NGE1 309 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 ZNF431Q8TF32 576 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-202ENST00000341753 AP2M1Q96CW1 435 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 ZSCAN5AQ9BUG6 496 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 WNT6Q9Y6F9 365 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 XIRP2A4UGR9 3374 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 ABHD14A-ACY1A0A1B0GW23 586 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 CIB4A0PJX0 185 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 TYRP14679 529 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 COX10Q12887 443 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 ZNF155Q12901 538 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-202ENST00000341753 ADAM15Q13444 863 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 MINDY4Q4G0A6 757 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 ZNF697Q5TEC3 545 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 PRICKLE2Q7Z3G6 844 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 C11orf96Q7Z7L8 435 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 ZNF485Q8NCK3 441 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 OR9A1PQ8NGU1 263 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 TRIM43Q96BQ3 446 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-202ENST00000341753 SMAD5Q99717 465 aaKnown RBP21.04■□□□□ 0.96
TRIM28-202ENST00000341753 MED28Q9H204 178 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 TDP1Q9NUW8 608 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 TEX10Q9NXF1 929 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-202ENST00000341753 KCNN3Q9UGI6 736 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 SATB2Q9UPW6 733 aa21.04■□□□□ 0.96
TRIM28-202ENST00000341753 EXOSC1Q9Y3B2 195 aaKnown RBP21.04■□□□□ 0.96
TRIM28-202ENST00000341753 DENND4CQ5VZ89 1909 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 SGK494L7N484 410 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 NNMTP40261 264 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 POU4F3Q15319 338 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 LY6G5CQ5SRR4 150 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 SLC25A30Q5SVS4 291 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 PLPP4Q5VZY2 271 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 C1orf94Q6P1W5 598 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 LILRA6Q6PI73 481 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 KRT74Q7RTS7 529 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 SPRED2Q7Z698 418 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 PLA2G15Q8NCC3 412 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 WDR34Q96EX3 536 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 FAM46AQ96IP4 442 aaKnown RBP21.03■□□□□ 0.96
TRIM28-202ENST00000341753 GLTPQ9NZD2 209 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 ZFR2Q9UPR6 939 aaKnown RBP21.03■□□□□ 0.96
TRIM28-202ENST00000341753 A0A087WUU8 490 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 FEZF1A0PJY2 475 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 QSOX1O00391 747 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 GRM6O15303 877 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 RFPL3O75679 317 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 CLTBP09497 229 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 TIMP2P16035 220 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 XPAP23025 273 aaPredicted RBP21.03■□□□□ 0.96
TRIM28-202ENST00000341753 RECQLP46063 649 aaPredicted RBP21.03■□□□□ 0.96
TRIM28-202ENST00000341753 PER3P56645 1201 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 GRIN2CQ14957 1233 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 RAET1GQ6H3X3 334 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 IKBIPQ70UQ0 350 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 AMER3Q8N944 861 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 OR11H7Q8NGC8 314 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 OR11H4Q8NGC9 324 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 OR2AG1Q9H205 316 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 B3GNT2Q9NY97 397 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 PRKAB1Q9Y478 270 aa21.03■□□□□ 0.96
TRIM28-202ENST00000341753 PRKRAO75569 313 aaKnown RBP21.02■□□□□ 0.96
TRIM28-202ENST00000341753 STATHP02808 62 aa21.02■□□□□ 0.96
TRIM28-202ENST00000341753 ATP6V1E1P36543 226 aa21.02■□□□□ 0.96
TRIM28-202ENST00000341753 NUDT1P36639 197 aa21.02■□□□□ 0.96
TRIM28-202ENST00000341753 ARHGEF6Q15052 776 aa21.02■□□□□ 0.96
TRIM28-202ENST00000341753 VASNQ6EMK4 673 aa21.02■□□□□ 0.96
TRIM28-202ENST00000341753 MZT2AQ6P582 158 aa21.02■□□□□ 0.96
TRIM28-202ENST00000341753 METAP1DQ6UB28 335 aaPredicted RBP21.02■□□□□ 0.96
TRIM28-202ENST00000341753 ADIPOR2Q86V24 386 aa21.02■□□□□ 0.96
TRIM28-202ENST00000341753 GHDCQ8N2G8 530 aa21.02■□□□□ 0.96
TRIM28-202ENST00000341753 CREB3L1Q96BA8 519 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms