RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PECAM1P16284 738 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 HOXA6P31267 233 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 OMPP47874 163 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 IDH3GP51553 393 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF718Q3SXZ3 478 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 IDNKQ5T6J7 187 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 EMBQ6PCB8 327 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 GPRIN1Q7Z2K8 1008 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PLPP6Q8IY26 295 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ZBTB44Q8NCP5 570 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 IL17RDQ8NFM7 739 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 OR2L8Q8NGY9 312 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 WDR60Q8WVS4 1066 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 LPGAT1Q92604 370 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 LMF1Q96S06 567 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PAFAH2Q99487 392 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 UCK2Q9BZX2 261 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PIF1Q9H611 641 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 MYL12BO14950 172 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ARPC2O15144 300 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 SLC19A2O60779 497 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ITGA10O75578 1167 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 KLKB1P03952 638 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 SELEP16581 610 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 XRCC1P18887 633 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 TPTEP56180 551 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 OR4C11Q6IEV9 310 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 TRAF7Q6Q0C0 670 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 SCD5Q86SK9 330 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 MRGPREQ86SM8 312 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ASCC1Q8N9N2 400 aaKnown RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 OR7A2PQ8NGA2 310 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 SLC52A3Q9NQ40 469 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 CHRAC1Q9NRG0 131 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 NUP50Q9UKX7 468 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 FEZF1A0PJY2 475 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 MEIOCA2RUB1 952 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 GSTP1P09211 210 aaKnown RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 GPR143P51810 404 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 GDF10P55107 478 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 FRG1Q14331 258 aaKnown RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 NOMO1Q15155 1222 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 MANEALQ5VSG8 457 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ERICH5Q6P6B1 374 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 IZUMO1Q8IYV9 350 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ZFP90Q8TF47 636 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 LRRN4Q8WUT4 740 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PGM2Q96G03 612 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 DUSP26Q9BV47 211 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 DSN1Q9H410 356 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 DPH3P1Q9H4G8 78 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 COPS3Q9UNS2 423 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 NPIPB15A6NHN6 443 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 DNALI1O14645 258 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 MTRF1O75570 445 aaKnown RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ABHD16AO95870 558 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 HCKP08631 526 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 UBL4AP11441 157 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 BPIP17213 487 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 RPS6KA3P51812 740 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 SCRN3Q0VDG4 424 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 OLIG2Q13516 323 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 FASTKD3Q14CZ7 662 aaKnown RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PM20D1Q6GTS8 502 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF813Q6ZN06 617 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ABCA7Q8IZY2 2146 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PHTF2Q8N3S3 785 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 GLB1L3Q8NCI6 653 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PITHD1Q9GZP4 211 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 IGHV3-20A0A0C4DH32 117 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 TGFAP01135 160 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PNLIPP16233 465 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 RPS4XP62701 263 aaKnown RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 GRB7Q14451 532 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 NRF1Q16656 503 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 RGS7BPQ6MZT1 257 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PLCZ1Q86YW0 608 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 GCNT2Q8N0V5 402 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 SLC47A1Q96FL8 570 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ZC3H10Q96K80 434 aaKnown RBP7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PHB2Q99623 299 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 TUBA4BQ9H853 241 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 PLGRKTQ9HBL7 147 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 DLGAP4Q9Y2H0 992 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 ST14Q9Y5Y6 855 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 KNDC1Q76NI1 1749 aa7.88□□□□□ -1.15
HMGB1-203ENST00000341423 ZIC2O95409 532 aaPredicted RBP7.88□□□□□ -1.15
HMGB1-203ENST00000341423 DBHP09172 617 aa7.88□□□□□ -1.15
HMGB1-203ENST00000341423 MMP12P39900 470 aa7.88□□□□□ -1.15
HMGB1-203ENST00000341423 GSTM5P46439 218 aa7.88□□□□□ -1.15
HMGB1-203ENST00000341423 AGFG1P52594 562 aaKnown RBP7.88□□□□□ -1.15
HMGB1-203ENST00000341423 NKX6-1P78426 367 aaPredicted RBP7.88□□□□□ -1.15
HMGB1-203ENST00000341423 FZD2Q14332 565 aa7.88□□□□□ -1.15
HMGB1-203ENST00000341423 NDUFAF6Q330K2 333 aa7.88□□□□□ -1.15
HMGB1-203ENST00000341423 RAD9BQ6WBX8 426 aa7.88□□□□□ -1.15
HMGB1-203ENST00000341423 CHST4Q8NCG5 386 aa7.88□□□□□ -1.15
HMGB1-203ENST00000341423 BBS10Q8TAM1 723 aa7.88□□□□□ -1.15
HMGB1-203ENST00000341423 AENQ8WTP8 325 aaKnown RBP7.88□□□□□ -1.15
HMGB1-203ENST00000341423 SLC25A43Q8WUT9 341 aaPredicted RBP7.88□□□□□ -1.15
HMGB1-203ENST00000341423 GGHQ92820 318 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms