RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CYB561P49447 251 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 DEFB109BQ30KR1 87 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 GUSBP11Q6P575 273 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 LINC00696Q6ZRV3 163 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 CARFQ8N187 725 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 TESCQ96BS2 214 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 MOCOSQ96EN8 888 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 OR10A5Q9H207 317 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 ERVMER34-1Q9H9K5 563 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 TRAPPC13A5PLN9 417 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 GALR3O60755 368 aaPredicted RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 ANGPTL1O95841 491 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 CCNOP22674 350 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 GABRB3P28472 473 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 DAG1Q14118 895 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 ALG10BQ5I7T1 473 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 SLC22A16Q86VW1 577 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 CHERPQ8IWX8 916 aaKnown RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 TSSK6Q9BXA6 273 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 SLC6A16Q9GZN6 736 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 BAIAP2Q9UQB8 552 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 RBM7Q9Y580 266 aaKnown RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 ANTXRLA6NF34 631 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 GABRR3A8MPY1 467 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 ZNF891A8MT65 544 aaPredicted RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 CASC3O15234 703 aaKnown RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 NSA2O95478 260 aaKnown RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 SP9P0CG40 484 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 MAGEA8P43361 318 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 IL11RAQ14626 422 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 PMS2CLQ68D20 193 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 OR8H2Q8N162 312 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 CDCP1Q9H5V8 836 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 MKRN2OSH3BPM6 223 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 TAPBPO15533 448 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 NUP62P37198 522 aaPredicted RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 NUBP1P53384 320 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 LIM2P55344 173 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 CRYZQ08257 329 aaKnown RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 SGCAQ16586 387 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 LPCAT4Q643R3 524 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 OGFOD2Q6N063 350 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 ALDH16A1Q8IZ83 802 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 FRMD1Q8N878 549 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 YIPF7Q8N8F6 280 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 OR7D2Q96RA2 312 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 ARID2Q68CP9 1835 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 DLL1O00548 723 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 HMGB3O15347 200 aaKnown RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 ETFAP13804 333 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 ZNF43P17038 809 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 DMPKQ09013 629 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 ABHD17CQ6PCB6 329 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 GID4Q8IVV7 300 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 PNLDC1Q8NA58 520 aaKnown RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 TMBIM1Q969X1 311 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 SLC41A3Q96GZ6 507 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 LCORQ96JN0 433 aaPredicted RBP9.55□□□□□ -0.88
USP54-201ENST00000339859 FOLH1BQ9HBA9 442 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 PRDM6Q9NQX0 595 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 ADAM23O75077 832 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 MT-ND5P03915 603 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 FESP07332 822 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 DCTP40126 519 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 DAP3P51398 398 aaKnown RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 METAP1P53582 386 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 VLDLRP98155 873 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 KIAA0907Q7Z7F0 614 aaPredicted RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 CLVS1Q8IUQ0 354 aaPredicted RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 PACRGLQ8N7B6 248 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 OR4D9Q8NGE8 314 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 UFD1Q92890 307 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 AURKBQ96GD4 344 aaPredicted RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 STMN3Q9NZ72 180 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 H0YC42 278 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 DDAH2O95865 285 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 DHRS4L1P0CG22 281 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 DRD3P35462 400 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 IDUAP35475 653 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 TMEM53Q6P2H8 277 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 DHRS13Q6UX07 377 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 NETO1Q8TDF5 533 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 PMM1Q92871 262 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 NANSQ9NR45 359 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 FAM86C1Q9NVL1 165 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 RHCGQ9UBD6 479 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 LAMP5Q9UJQ1 280 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 A0A1B0GTQ1 180 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 SLC30A4O14863 429 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 H6PDO95479 791 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 PCGF2P35227 344 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 GK3PQ14409 553 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 SLC22A10Q63ZE4 541 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 CCDC80Q76M96 950 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 GALNT10Q86SR1 603 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 IZUMO1Q8IYV9 350 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 ANKFN1Q8N957 763 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 THEM6Q8WUY1 208 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 INPP5KQ9BT40 448 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms