RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 THAP4Q8WY91 577 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 NIPAL2Q9H841 368 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 DNMT3AQ9Y6K1 912 aaPredicted RBP10.93□□□□□ -0.66
VPS39-201ENST00000318006 WASHC1A8K0Z3 465 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 TSPAN15O95858 294 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 IL1AP01583 271 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 SMIM18P0DKX4 95 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 SHMT2P34897 504 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 HTR6P50406 440 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 GAS6Q14393 721 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 LINC00299Q6ZSB3 139 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 OR4K5Q8NGD3 323 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 NTN4Q9HB63 628 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 CSNK1G1Q9HCP0 422 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 DZANK1Q9NVP4 752 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 B4DGG1 531 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 TXNL1O43396 289 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 ALX3O95076 343 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 STATHP02808 62 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 ALPLP05186 524 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 S1PR1P21453 382 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 NAA10P41227 235 aaPredicted RBP10.93□□□□□ -0.66
VPS39-201ENST00000318006 ERVPABLB-1P60509 514 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 CYCSP99999 105 aaKnown RBP10.93□□□□□ -0.66
VPS39-201ENST00000318006 ELAVL3Q14576 367 aaKnown RBP10.93□□□□□ -0.66
VPS39-201ENST00000318006 SPATC1Q76KD6 591 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 SLC16A9Q7RTY1 509 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 SVBPQ8N300 66 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 FIBINQ8TAL6 211 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 NT5C3BQ969T7 300 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 TREX2Q9BQ50 279 aaPredicted RBP10.93□□□□□ -0.66
VPS39-201ENST00000318006 NMNAT1Q9HAN9 279 aaPredicted RBP10.93□□□□□ -0.66
VPS39-201ENST00000318006 IL23AQ9NPF7 189 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 RPS10P5Q9NQ39 176 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 GXYLT2A0PJZ3 443 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 TSTD3H0UI37 97 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 ARNTLO00327 626 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 ARPC1BO15143 372 aaKnown RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 TGM5O43548 720 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 ETFAP13804 333 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 NKX6-1P78426 367 aaPredicted RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 VEZF1Q14119 521 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 LACC1Q8IV20 430 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 CADM3Q8N126 398 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 OR52N2Q8NGI0 321 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 RPL3LQ92901 407 aaKnown RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 PMEPA1Q969W9 287 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 RDH14Q9HBH5 336 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 SCN7AQ01118 1682 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 TTC34A8MYJ7 566 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 IFNA1P01562 189 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 AMY2AP04746 511 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 C1GALT1C1LP0DN25 315 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 BPIP17213 487 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 DLX5P56178 289 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 MEF2AQ02078 507 aaPredicted RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 TUBB3Q13509 450 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 APOFQ13790 326 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 FAM205BPQ63HN1 556 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 KDELC1Q6UW63 502 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 CREB3L2Q70SY1 520 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 FAM86B1Q8N7N1 296 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 OR9Q2Q8NGE9 314 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 SUN3Q8TAQ9 357 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 SCGB1C1Q8TD33 95 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 SGIP1Q9BQI5 828 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 ZNF416Q9BWM5 594 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 KATNBL1Q9H079 304 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 LIPT1Q9Y234 373 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 SCAMP2O15127 329 aaKnown RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 LDB2O43679 373 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 SSX4O60224 188 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 C8orf89P0DMQ9 161 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 RPS2P15880 293 aaKnown RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 PTNP21246 168 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 C21orf33P30042 268 aaPredicted RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 PKDCCQ504Y2 493 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 KCTD18Q6PI47 426 aaPredicted RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 TCEAL8Q8IYN2 117 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 OR5T2Q8NGG2 359 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 FUBP1Q96AE4 644 aaKnown RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 PHB2Q99623 299 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 FN3KQ9H479 309 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 Q9N2J8 555 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 WASH6PQ9NQA3 447 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 VNN3Q9NY84 501 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 VAPAQ9P0L0 249 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 H7BY64 318 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 SEC14L2O76054 403 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 CD70P32970 193 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 DLSTP36957 453 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 FAM189BP81408 668 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 DEFA6Q01524 100 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 TAP2Q03519 686 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 FAM214AQ32MH5 1076 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 CLECL1Q8IZS7 167 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 C12orf76Q8N812 135 aaPredicted RBP10.92□□□□□ -0.66
VPS39-201ENST00000318006 AVL9Q8NBF6 648 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 ANKK1Q8NFD2 765 aa10.92□□□□□ -0.66
VPS39-201ENST00000318006 OR1J4Q8NGS1 313 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms