RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 PDSS2Q86YH6 399 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 PRR22Q8IZ63 422 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 URM1Q9BTM9 101 aaKnown RBP17.53■□□□□ 0.4
PCDH1-201ENST00000287008 hCG_1807616A0A1W2PRN6 198 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 LDB3O75112 727 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 RAD51DO75771 328 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 ZNF35P13682 527 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 CAPN3P20807 821 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 C6orf141Q5SZD1 244 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 IL17RCQ8NAC3 791 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 OR4K13Q8NH42 304 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 TMEM45AQ9NWC5 275 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 PFDN2Q9UHV9 154 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 JRKO75564 520 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 ZNF12P17014 697 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 NANOS1Q8WY41 292 aaKnown RBP17.53■□□□□ 0.4
PCDH1-201ENST00000287008 SLC41A3Q96GZ6 507 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 CCNL2Q96S94 520 aaPredicted RBP17.53■□□□□ 0.4
PCDH1-201ENST00000287008 TMEM185BQ9H7F4 350 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 TMEM9Q9P0T7 183 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 C14orf166Q9Y224 244 aaKnown RBP17.53■□□□□ 0.4
PCDH1-201ENST00000287008 ZFAND5O76080 213 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 GGT1P19440 569 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 CDKL1Q00532 357 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 BNIP3Q12983 259 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 ZNF404Q494X3 552 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 C6orf89Q6UWU4 347 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 LINC01465Q8N7H1 131 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 CHFRQ96EP1 664 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 RTP3Q9BQQ7 232 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 FUZQ9BT04 418 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 SCP2D1Q9UJQ7 156 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 VDAC3Q9Y277 283 aa17.53■□□□□ 0.4
PCDH1-201ENST00000287008 ARID1BQ8NFD5 2236 aaPredicted RBP17.53■□□□□ 0.4
PCDH1-201ENST00000287008 RNASET2O00584 256 aaKnown RBP17.52■□□□□ 0.4
PCDH1-201ENST00000287008 AHRP35869 848 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 TRAM1Q15629 374 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 STX12Q86Y82 276 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 NEIL3Q8TAT5 605 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 PDLIM5Q96HC4 596 aaKnown RBP17.52■□□□□ 0.4
PCDH1-201ENST00000287008 UBE2ZQ9H832 354 aaPredicted RBP17.52■□□□□ 0.4
PCDH1-201ENST00000287008 C2orf42Q9NWW7 574 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 RIMS3Q9UJD0 308 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 RPH3AQ9Y2J0 694 aaPredicted RBP17.52■□□□□ 0.4
PCDH1-201ENST00000287008 SPTA1P02549 2419 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 NDUFB2O95178 105 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 FESP07332 822 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 C7P10643 843 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 PVALBP20472 110 aaPredicted RBP17.52■□□□□ 0.4
PCDH1-201ENST00000287008 TRA2BP62995 288 aaKnown RBP17.52■□□□□ 0.4
PCDH1-201ENST00000287008 ZXDBP98169 803 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 C6orf132Q5T0Z8 1188 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 TMED4Q7Z7H5 227 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 DEFB123Q8N688 67 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 ZNF615Q8N8J6 731 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 ASB16Q96NS5 453 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 NEDD4LQ96PU5 975 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 TMEM121BQ9BXQ6 578 aaPredicted RBP17.52■□□□□ 0.4
PCDH1-201ENST00000287008 IRF2BPLQ9H1B7 796 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 MYNNQ9NPC7 610 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 SMIM30A4D0T7 59 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 HRGP04196 525 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 FCER2P06734 321 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 PSMB5P28074 263 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 PRDX3P30048 256 aaKnown RBP17.52■□□□□ 0.4
PCDH1-201ENST00000287008 EIF2DP41214 584 aaKnown RBP17.52■□□□□ 0.4
PCDH1-201ENST00000287008 ACTA2P62736 377 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 ACTG2P63267 376 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 OPN5Q6U736 354 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 CNTN4Q8IWV2 1026 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 KCNN1Q92952 543 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 ADOQ96SZ5 270 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 TMPRSS11EQ9UL52 423 aa17.52■□□□□ 0.4
PCDH1-201ENST00000287008 SLX4Q8IY92 1834 aa17.52■□□□□ 0.39
PCDH1-201ENST00000287008 GPR75O95800 540 aa17.52■□□□□ 0.39
PCDH1-201ENST00000287008 PNMTP11086 282 aa17.52■□□□□ 0.39
PCDH1-201ENST00000287008 CKMT1AP12532 417 aa17.52■□□□□ 0.39
PCDH1-201ENST00000287008 FOXA1P55317 472 aa17.52■□□□□ 0.39
PCDH1-201ENST00000287008 MAZP56270 477 aaKnown RBP17.52■□□□□ 0.39
PCDH1-201ENST00000287008 NKAPLQ5M9Q1 402 aa17.52■□□□□ 0.39
PCDH1-201ENST00000287008 CNN2Q99439 309 aaKnown RBP17.52■□□□□ 0.39
PCDH1-201ENST00000287008 RBM24Q9BX46 236 aaKnown RBP17.52■□□□□ 0.39
PCDH1-201ENST00000287008 SORBS1Q9BX66 1292 aaKnown RBP17.52■□□□□ 0.39
PCDH1-201ENST00000287008 CUTCQ9NTM9 273 aa17.52■□□□□ 0.39
PCDH1-201ENST00000287008 TRBV2A0A0J9YWF9 115 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 LCN8Q6JVE9 175 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 TIGD4Q8IY51 512 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 OR5K2Q8NHB8 316 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 TCTN2Q96GX1 697 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 ATOH8Q96SQ7 321 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 INPP5KQ9BT40 448 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 ACPTQ9BZG2 426 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 ADAMTS6Q9UKP5 1117 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 YKT6O15498 198 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 ZNF16P17020 682 aaPredicted RBP17.51■□□□□ 0.39
PCDH1-201ENST00000287008 RACK1P63244 317 aaKnown RBP17.51■□□□□ 0.39
PCDH1-201ENST00000287008 DUSP6Q16828 381 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 PARM1Q6UWI2 310 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 OR9A4Q8NGU2 314 aa17.51■□□□□ 0.39
PCDH1-201ENST00000287008 ZNF675Q8TD23 568 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms