RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 NDEL1Q9GZM8 345 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 MRM3Q9HC36 420 aaKnown RBP4.22□□□□□ -1.73
CD44-202ENST00000278385 MTCH1Q9NZJ7 389 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 FOXJ2Q9P0K8 574 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 OR14J1Q9UGF5 321 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 CYTH4Q9UIA0 394 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 ENPP5Q9UJA9 477 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 GRIP1Q9Y3R0 1128 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 ATG4BQ9Y4P1 393 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 NME7Q9Y5B8 376 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 NID2Q14112 1375 aa4.22□□□□□ -1.73
CD44-202ENST00000278385 A0A0A0MQY5 61 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 IGKV6D-21A0A0A0MT36 114 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 GOLGA8QA0A0J9YX86 632 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 SMIM35A0A1B0GVV1 85 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 A0A1W2PPK0 400 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 TYW5A2RUC4 315 aaKnown RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 TMEM210A6NLX4 147 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 LINC00473A8K010 186 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 PRSS46E5RG02 174 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 NPIPA2E9PIF3 369 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 M0QZ92 97 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 PDLIM1O00151 329 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 WWP2O00308 870 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 PLPP2O43688 288 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 KDELR3O43731 214 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 OR10H2O60403 315 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 GLRA3O75311 464 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 NEBLO76041 1014 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 GJB5O95377 273 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 SYNGR4O95473 234 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 FTH1P02794 183 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 RETP07949 1114 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 NPSP0C0P6 89 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 CCNB1P14635 433 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 CPN1P15169 458 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 MYOGP15173 224 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 B4GALT1P15291 398 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 NAGAP17050 411 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 DGKAP23743 735 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 MARK3P27448 753 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 PPP1R2P41236 205 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 CXCR3P49682 368 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 FHITP49789 147 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 NLRP11P59045 1033 aaKnown RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 TNNC1P63316 161 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 CSNK1G2P78368 415 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 ZFP36L1Q07352 338 aaKnown RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 FADDQ13158 208 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 GPS2Q13227 327 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 CUL3Q13618 768 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 DGCR6Q14129 220 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 PON2Q15165 354 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 P2RY14Q15391 338 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 STX1AQ16623 288 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 ARL13AQ5H913 290 aaPredicted RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 EOGTQ5NDL2 527 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 THEM4Q5T1C6 240 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 ZNF770Q6IQ21 691 aaPredicted RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 FAM166AQ6J272 317 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 PPP1R2P3Q6NXS1 205 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 RNASEKQ6P5S7 137 aaKnown RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 PLXDC2Q6UX71 529 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 DPY19L3Q6ZPD9 716 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 LINGO2Q7L985 606 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 SLC22A16Q86VW1 577 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 KLBQ86Z14 1044 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 FAM114A1Q8IWE2 563 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 LRRC8AQ8IWT6 810 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 NELFCDQ8IXH7 590 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 PQLC3Q8N755 202 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 ZNF781Q8N8C0 355 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 CEP112Q8N8E3 955 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 FAM83FQ8NEG4 500 aaPredicted RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 BEST2Q8NFU1 509 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 OR7G1Q8NGA0 311 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 OR13C9Q8NGT0 318 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 OR2AJ1Q8NGZ0 328 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 M1APQ8TC57 530 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 DTX3LQ8TDB6 740 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 SAP25Q8TEE9 199 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 FAR1Q8WVX9 515 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 SPRYD4Q8WW59 207 aaPredicted RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 DNAJB3Q8WWF6 145 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 TANKQ92844 425 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 SENP5Q96HI0 755 aaPredicted RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 SNX18Q96RF0 628 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 ABHD14AQ9BUJ0 271 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 KRTAP4-2Q9BYR5 136 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 GAL3ST2Q9H3Q3 398 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 DCLRE1BQ9H816 532 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 ELOVL3Q9HB03 270 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 CSNK1G1Q9HCP0 422 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 MRPS30Q9NP92 439 aaKnown RBP4.21□□□□□ -1.74
CD44-202ENST00000278385 ZNF302Q9NR11 478 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 ACOXLQ9NUZ1 547 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 ASB6Q9NWX5 421 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 SPHK1Q9NYA1 384 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 DLL3Q9NYJ7 618 aa4.21□□□□□ -1.74
CD44-202ENST00000278385 NKIRAS1Q9NYS0 192 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms