RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 PCDHGA7Q9Y5G6 932 aa10.88□□□□□ -0.67
USP53-201ENST00000274030 PCDHGA6Q9Y5G7 932 aa10.88□□□□□ -0.67
USP53-201ENST00000274030 RICTORQ6R327 1708 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 SPEF2Q9C093 1822 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 SGK494L7N484 410 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 RGS9O75916 674 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 PROS1P07225 676 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 CEBPBP17676 345 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 CFL1P23528 166 aaKnown RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 EIF2S3LQ2VIR3 472 aaKnown RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 GRHL2Q6ISB3 625 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 ZNF852Q6ZMS4 543 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 CFAP77Q6ZQR2 320 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 ELMOD2Q8IZ81 293 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 GSTO2Q9H4Y5 243 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 RETREG1Q9H6L5 497 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 CSNK1G3Q9Y6M4 447 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 NOTOA8MTQ0 251 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 H7C417 338 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 MAN2B1O00754 1011 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 LDB3O75112 727 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 RP2O75695 350 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 P04436 131 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 DRD5P21918 477 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 VEGFBP49765 207 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 MANEALQ5VSG8 457 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 CCBE1Q6UXH8 406 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 UNC5DQ6UXZ4 953 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 ARFGAP1Q8N6T3 406 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 OR5L2Q8NGL0 311 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 OR14L1PQ8NHC6 308 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 MFSD8Q8NHS3 518 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 THRSPQ92748 146 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 ACTRT3Q9BYD9 372 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 NMNAT1Q9HAN9 279 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 MAN2C1Q9NTJ4 1040 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 SLC7A7Q9UM01 511 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 STUB1Q9UNE7 303 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 A0A0A6YYC8 382 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 I3L1I5 382 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 LATS1O95835 1130 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 LCKP06239 509 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 H2AFB2P0C5Z0 115 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 GSTM4Q03013 218 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 GBX1Q14549 363 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 C17orf99Q6UX52 265 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 ZMYND19Q96E35 227 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 TCEAL4Q96EI5 215 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 HHIPQ96QV1 700 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 ZNF559Q9BR84 538 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 MTHFD2LQ9H903 347 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 TAS2R3Q9NYW6 316 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 ICKQ9UPZ9 632 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 MAB21L2Q9Y586 359 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 PHLPP1O60346 1717 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 RDH16O75452 317 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 P2RY2P41231 377 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 LCN8Q6JVE9 175 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 METTL2BQ6P1Q9 378 aaKnown RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 Q6ZSR6 202 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 GALNT6Q8NCL4 622 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 RLN3Q8WXF3 142 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 CREB3L1Q96BA8 519 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 NECAB3Q96P71 396 aaPredicted RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 RBM24Q9BX46 236 aaKnown RBP10.87□□□□□ -0.67
USP53-201ENST00000274030 SYNPO2LQ9H987 977 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 ENPP4Q9Y6X5 453 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 MYH6P13533 1939 aa10.87□□□□□ -0.67
USP53-201ENST00000274030 APBB3O95704 486 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 HNRNPA2B1P22626 353 aaKnown RBP10.86□□□□□ -0.67
USP53-201ENST00000274030 DNASE1P24855 282 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 GSTM2P28161 218 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 NR4A2P43354 598 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 NTRK2Q16620 822 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 COL28A1Q2UY09 1125 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 SYT14Q8NB59 555 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 NLKQ9UBE8 527 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 COL14A1Q05707 1796 aaKnown RBP10.86□□□□□ -0.67
USP53-201ENST00000274030 OXSR1O95747 527 aaPredicted RBP10.86□□□□□ -0.67
USP53-201ENST00000274030 HSD17B1P14061 328 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 CLDN10P78369 228 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 DSC1Q08554 894 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 UGT2A3Q6UWM9 527 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 TMEM151BQ8IW70 566 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 SCGB1C1Q8TD33 95 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 COPZ2Q9P299 210 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 CACNA1FO60840 1977 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 NALCNQ8IZF0 1738 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 MAP1BP46821 2468 aaKnown RBP10.86□□□□□ -0.67
USP53-201ENST00000274030 A0A0A6YYH2 397 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 A6NJ64 397 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 A6NL46 340 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 H0YJX3 145 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 NKX2-5P52952 324 aaPredicted RBP10.86□□□□□ -0.67
USP53-201ENST00000274030 ACTA2P62736 377 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 ACTG2P63267 376 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 MFSD13AQ14CX5 517 aa10.86□□□□□ -0.67
USP53-201ENST00000274030 CPOQ8IVL8 374 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms