RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 CLDN19Q8N6F1 224 aa12.88□□□□□ -0.35
GABPB1-201ENST00000220429 L3MBTL4Q8NA19 623 aa12.88□□□□□ -0.35
GABPB1-201ENST00000220429 OR1S1Q8NH92 325 aa12.88□□□□□ -0.35
GABPB1-201ENST00000220429 VOPP1Q96AW1 172 aa12.88□□□□□ -0.35
GABPB1-201ENST00000220429 TMEM41AQ96HV5 264 aa12.88□□□□□ -0.35
GABPB1-201ENST00000220429 ZNF382Q96SR6 550 aa12.88□□□□□ -0.35
GABPB1-201ENST00000220429 TCEAL7Q9BRU2 100 aa12.88□□□□□ -0.35
GABPB1-201ENST00000220429 ALX4Q9H161 411 aaPredicted RBP12.88□□□□□ -0.35
GABPB1-201ENST00000220429 LATS2Q9NRM7 1088 aa12.88□□□□□ -0.35
GABPB1-201ENST00000220429 ZIM2Q9NZV7 527 aa12.88□□□□□ -0.35
GABPB1-201ENST00000220429 EXO1Q9UQ84 846 aaKnown RBP12.88□□□□□ -0.35
GABPB1-201ENST00000220429 HYKKA2RU49 373 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 SLC31A2O15432 143 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 RD3LP0DJH9 198 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 ZNF7P17097 686 aaPredicted RBP12.87□□□□□ -0.35
GABPB1-201ENST00000220429 BPIP17213 487 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 ATP5A1P25705 553 aaKnown RBP12.87□□□□□ -0.35
GABPB1-201ENST00000220429 PTBP1P26599 531 aaKnown RBP eCLIP12.87□□□□□ -0.352e-8■■■■□ 24.2
GABPB1-201ENST00000220429 SDC2P34741 201 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 GGT2P36268 569 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 SOX3P41225 446 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 MAGEA2P43356 314 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 CSNK1DP48730 415 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 NR0B1P51843 470 aaKnown RBP12.87□□□□□ -0.35
GABPB1-201ENST00000220429 TAS2R60P59551 318 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 TSPAN5P62079 268 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 TNFRSF17Q02223 184 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 SLC3A1Q07837 685 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 GPR176Q14439 515 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 ACER2Q5QJU3 275 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 AVPI1Q5T686 147 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 PRAMEF13Q5VWM6 474 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 PDZD9Q8IXQ8 264 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 LIX1Q8N485 282 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 PROKR1Q8TCW9 393 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 MAP3K3Q99759 626 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 QRSL1Q9H0R6 528 aaKnown RBP12.87□□□□□ -0.35
GABPB1-201ENST00000220429 CHMP1AQ9HD42 196 aaPredicted RBP12.87□□□□□ -0.35
GABPB1-201ENST00000220429 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.87□□□□□ -0.35
GABPB1-201ENST00000220429 SH3BP4Q9P0V3 963 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 GHRLQ9UBU3 117 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 DMRT1Q9Y5R6 373 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 TRBV5-4A0A0C4DH59 114 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 CBR1P16152 277 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 IL1RNP18510 177 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 CTSOP43234 321 aaPredicted RBP12.87□□□□□ -0.35
GABPB1-201ENST00000220429 RNF212Q495C1 297 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 MPPE1Q53F39 396 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 C1orf53Q5VUE5 145 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 ELP2Q6IA86 826 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 TRIM69Q86WT6 500 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 B3GNT7Q8NFL0 401 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 FIBINQ8TAL6 211 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 PEX11GQ96HA9 241 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 KCNC2Q96PR1 638 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 ZBP1Q9H171 429 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 VAPAQ9P0L0 249 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 NEUROG3Q9Y4Z2 214 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 PIAS3Q9Y6X2 628 aa12.87□□□□□ -0.35
GABPB1-201ENST00000220429 A0A1W2PRU2 124 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 CASC3O15234 703 aaKnown RBP12.86□□□□□ -0.35
GABPB1-201ENST00000220429 SOCS5O75159 536 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 ADH1CP00326 375 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 CRYBA1P05813 215 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 COX5BP10606 129 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 PRG2P13727 222 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 NDUFB7P17568 137 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 PPP3R1P63098 170 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 SEMG2Q02383 582 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 PCBP2Q15366 365 aaKnown RBP eCLIP12.86□□□□□ -0.355e-39■■■■■ 107
GABPB1-201ENST00000220429 METAP1DQ6UB28 335 aaPredicted RBP12.86□□□□□ -0.35
GABPB1-201ENST00000220429 Q6ZSR9 355 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 TSPAN33Q86UF1 283 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 NETO1Q8TDF5 533 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 ART5Q96L15 291 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 SMG9Q9H0W8 520 aaKnown RBP12.86□□□□□ -0.35
GABPB1-201ENST00000220429 WNT5BQ9H1J7 359 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 NUDT15Q9NV35 164 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 SAGE1Q9NXZ1 904 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 MED11Q9P086 117 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 LOC105369274A0A096LPK9 316 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 ANKDD1BA6NHY2 528 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 G3V3Q6 166 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 ARNTLO00327 626 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 OR7A17O14581 309 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 SOX30O94993 753 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 SLC25A14O95258 325 aaPredicted RBP12.86□□□□□ -0.35
GABPB1-201ENST00000220429 SIX6O95475 246 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 IGSF6O95976 241 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 CLTBP09497 229 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 SULT1A3P0DMM9 295 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 SULT1A4P0DMN0 295 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 CSF2RAP15509 400 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 ACRV1P26436 265 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 LAP3P28838 519 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 CALCRP30988 508 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 STK19P49842 368 aaPredicted RBP12.86□□□□□ -0.35
GABPB1-201ENST00000220429 HTR6P50406 440 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 CTSCP53634 463 aa12.86□□□□□ -0.35
GABPB1-201ENST00000220429 NR6A1Q15406 480 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms