RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 UBE2R2Q712K3 238 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 LRRC28Q86X40 367 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 FAM131BQ86XD5 332 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 OR10J5Q8NHC4 309 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 GPR152Q8TDT2 470 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 EEF1AKMT1Q8WVE0 214 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 R3HDM4Q96D70 268 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 DYNLL2Q96FJ2 89 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PDLIM5Q96HC4 596 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 NT5C1AQ9BXI3 368 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 OR52A5Q9H2C5 316 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 RAD18Q9NS91 495 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 GPATCH2LQ9NWQ4 482 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 C1orf109Q9NX04 203 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 CNOT2Q9NZN8 540 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 FARSAQ9Y285 508 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 AAR2Q9Y312 384 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 A0A087WZ62 844 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 C3orf70A6NLC5 250 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 A8MXE2 369 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 H3BN98 237 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 QSOX1O00391 747 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 DPM1O60762 260 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 ICOSLGO75144 302 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SC5DO75845 299 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 HLA-DPB1P04440 258 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 RHOP08100 348 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 METTL15P1P0C7V9 234 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 CXCL3P19876 107 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 HRH2P25021 359 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 MAPK3P27361 379 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 GGT2P36268 569 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 CASP7P55210 303 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 STARD6P59095 220 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 ILKQ13418 452 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SLC14A2Q15849 920 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 ACTBL2Q562R1 376 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TPGS2Q68CL5 300 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 PLAG1Q6DJT9 500 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TMPRSS11FQ6ZWK6 438 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 CXXC5Q7LFL8 322 aaKnown RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 PYROXD2Q8N2H3 581 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 PTGR2Q8N8N7 351 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 PAQR8Q8TEZ7 354 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 FAM216AQ8WUB2 273 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 MYOCQ99972 504 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 OR10A4Q9H209 315 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 ZCCHC4Q9H5U6 513 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 ALG9Q9H6U8 611 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TPT1P8Q9HAU6 139 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 JPH1Q9HDC5 661 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 C2orf92A0A1B0GVN3 265 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 C7orf66A4D0T2 115 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 FAM220BPB1ANY3 271 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SPATA31C2B4DYI2 1134 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 MCRIP1C9JLW8 97 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 CHST10O43529 356 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 IGFBP1P08833 259 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 STAG3L1P0CL83 205 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 HIST1H1BP16401 226 aaKnown RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 GABRR2P28476 465 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 GJA5P36382 358 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 CDC34P49427 236 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 CLCN7P51798 805 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 CDK6Q00534 326 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 ITKQ08881 620 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SERINC3Q13530 473 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SURF2Q15527 256 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TKFCQ3LXA3 575 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 Q5PR19 223 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SFRP5Q5T4F7 317 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SLC25A24Q6NUK1 477 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 MON1AQ86VX9 555 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 MISPQ8IVT2 679 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SPPL3Q8TCT6 385 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SELENOMQ8WWX9 145 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SEBOXQ9HB31 216 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 DHCR7Q9UBM7 475 aaKnown RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 FBXL4Q9UKA2 621 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 V9GYS6 101 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 PIK3C2AO00443 1686 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 MANSC4A6NHS7 340 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 A8MT66 165 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 ITGB1BP1O14713 200 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 RECKO95980 971 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SULT1A3P0DMM9 295 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SULT1A4P0DMN0 295 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 AHRP35869 848 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 CSNK1EP49674 416 aaKnown RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 IDH3GP51553 393 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SPIBQ01892 262 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TAP2Q03519 686 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TTLL4Q14679 1199 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 UBXN2BQ14CS0 331 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 GUCA2BQ16661 112 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SBK1Q52WX2 424 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 C3orf38Q5JPI3 329 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 FAM69AQ5T7M9 428 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TAPT1Q6NXT6 567 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 LYPD4Q6UWN0 246 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms