RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PMP22Q01453 160 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 DUSP8Q13202 625 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 NNATQ16517 81 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 MPEG1Q2M385 716 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 ZNF468Q5VIY5 522 aaPredicted RBP16.44■□□□□ 0.22
CLN3-247ENST00000636351 TMEM198Q66K66 360 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 EPGNQ6UW88 154 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 MRGPRGQ86SM5 289 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 TAGAPQ8N103 731 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 NUDT8Q8WV74 236 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 TMEM125Q96AQ2 219 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 CTHRC1Q96CG8 243 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 SIGLEC12Q96PQ1 595 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 ITPAQ9BY32 194 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 KLHL1Q9NR64 748 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 ACSS1Q9NUB1 689 aaPredicted RBP16.44■□□□□ 0.22
CLN3-247ENST00000636351 KLF2Q9Y5W3 355 aaPredicted RBP16.44■□□□□ 0.22
CLN3-247ENST00000636351 A0A1W2PRB8 838 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 E9PBE3 544 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 CCL21O00585 134 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 UBDO15205 165 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 CFLARO15519 480 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 PLOD3O60568 738 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 SLC25A12O75746 678 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 OR6B1O95007 311 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 CD46P15529 392 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 GPX3P22352 226 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 TRHRP34981 398 aaPredicted RBP16.43■□□□□ 0.22
CLN3-247ENST00000636351 SOX3P41225 446 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 CA7P43166 264 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 IDH3AP50213 366 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 CDK9P50750 372 aaKnown RBP16.43■□□□□ 0.22
CLN3-247ENST00000636351 C21orf58P58505 322 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 LSM12Q3MHD2 195 aaKnown RBP16.43■□□□□ 0.22
CLN3-247ENST00000636351 PIGGQ5H8A4 983 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 ZNF766Q5HY98 468 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 SPINK14Q6IE38 97 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 OPN5Q6U736 354 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 IL20RBQ6UXL0 311 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 RIMKLAQ8IXN7 391 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 NATD1Q8N6N6 113 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 SIMC1Q8NDZ2 872 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 DNAJB8Q8NHS0 232 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 EBF4Q9BQW3 602 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 DUSP26Q9BV47 211 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 BHLHE41Q9C0J9 482 aaPredicted RBP16.43■□□□□ 0.22
CLN3-247ENST00000636351 DCTN4Q9UJW0 460 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 DTX4Q9Y2E6 619 aa16.43■□□□□ 0.22
CLN3-247ENST00000636351 FBN2P35556 2912 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 A0A087WV62 115 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 C9JVG2 144 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 CDK2AP1O14519 115 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 TROVE2P10155 538 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLN3-247ENST00000636351 SOAT1P35610 550 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 SOX18P35713 384 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 MDH1P40925 334 aaKnown RBP16.42■□□□□ 0.22
CLN3-247ENST00000636351 KIR3DL1P43629 444 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 NRG3P56975 720 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 STX1BP61266 288 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 GSTA3Q16772 222 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 OR4F3Q6IEY1 312 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 GPALPP1Q8IXQ4 340 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 ZNF808Q8N4W9 903 aaPredicted RBP16.42■□□□□ 0.22
CLN3-247ENST00000636351 MDS2Q8NDY4 140 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 COQ8BQ96D53 544 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 ELP4Q96EB1 424 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 HES7Q9BYE0 225 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 EQTNQ9NQ60 294 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 FGFR1OP2Q9NVK5 253 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 TAS2R9Q9NYW1 312 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 SNX8Q9Y5X2 465 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 GPR45Q9Y5Y3 372 aa16.42■□□□□ 0.22
CLN3-247ENST00000636351 PLOD2O00469 737 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 NME6O75414 186 aaPredicted RBP16.41■□□□□ 0.22
CLN3-247ENST00000636351 NEURL1O76050 574 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 WISP2O76076 250 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 C6orf47O95873 294 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 ABCB1P08183 1280 aaPredicted RBP16.41■□□□□ 0.22
CLN3-247ENST00000636351 SNRPB2P08579 225 aaKnown RBP16.41■□□□□ 0.22
CLN3-247ENST00000636351 HTR1EP28566 365 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 FRKP42685 505 aaPredicted RBP16.41■□□□□ 0.22
CLN3-247ENST00000636351 EMDP50402 254 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 PRKAG1P54619 331 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 UFM1P61960 85 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 MAPKAPK3Q16644 382 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 FAM174BQ3ZCQ3 159 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 SPDYE7PQ495Y7 208 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 PDCD4Q53EL6 469 aaKnown RBP16.41■□□□□ 0.22
CLN3-247ENST00000636351 SPANXN4Q5MJ08 99 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 BNC2Q6ZN30 1099 aaPredicted RBP16.41■□□□□ 0.22
CLN3-247ENST00000636351 CAMKMTQ7Z624 323 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 OR2L13Q8N349 312 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 SLC15A4Q8N697 577 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 ZNF441Q8N8Z8 693 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 TMEM178AQ8NBL3 297 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 C17orf47Q8NEP4 570 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 RFWD2Q8NHY2 731 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 OR5P2Q8WZ92 322 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 TP53INP1Q96A56 240 aa16.41■□□□□ 0.22
CLN3-247ENST00000636351 TESCQ96BS2 214 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms