RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CLLU1OSQ5K130 101 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ALG1LQ6GMV1 187 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 C22orf39Q6P5X5 142 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 MRPL10Q7Z7H8 261 aaKnown RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 ADAMTS19Q8TE59 1207 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 SOCS4Q8WXH5 440 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 EID2BQ96D98 161 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 MCHR1Q99705 422 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 FKBP14Q9NWM8 211 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ASIC5Q9NY37 505 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 MED11Q9P086 117 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 NUP50Q9UKX7 468 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 FKBP7Q9Y680 259 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 YY2O15391 372 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 SOCS5O75159 536 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 POP7O75817 140 aaKnown RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 ELAVL4P26378 380 aaKnown RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 HLA-DMAP28067 261 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 XCR1P46094 333 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 OMPP47874 163 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 PITPNAQ00169 270 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 FABP5Q01469 135 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ODF4Q2M2E3 257 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 SYT14P1Q58G82 188 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ZDHHC20Q5W0Z9 365 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 LYPD4Q6UWN0 246 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ZNF782Q6ZMW2 699 aaPredicted RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 WDR53Q7Z5U6 358 aaPredicted RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 NRMQ8IXM6 262 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 WFDC5Q8TCV5 224 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ZNF582Q96NG8 517 aaPredicted RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 FERD3LQ96RJ6 166 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 NEUROD4Q9HD90 331 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 COMMD9Q9P000 198 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 RPS6KB2Q9UBS0 482 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 PCDHGB7Q9Y5F8 929 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 V9GYH0 126 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 EP400Q96L91 3159 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 A0A1W2PRU2 124 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 GRM6O15303 877 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 RPP14O95059 124 aaKnown RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 TFP02787 698 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 CRYBB2P43320 205 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 MRPL19P49406 292 aaKnown RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 CCR4P51679 360 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 PFN3P60673 137 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 TRAM2Q15035 370 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 C4orf46Q504U0 113 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 USP50Q70EL3 339 aaPredicted RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 NUDT13Q86X67 352 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 KLHDC8BQ8IXV7 354 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 OR5P2Q8WZ92 322 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 WBP2Q969T9 261 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 TRMT61AQ96FX7 289 aaKnown RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 CXorf36Q9H7Y0 433 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ADAP2Q9NPF8 381 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 TMEM5Q9Y2B1 443 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ZNF780BQ9Y6R6 833 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 TMEM202A6NGA9 273 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 MPC1LP0DKB6 136 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 KHKP50053 298 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 ARHGDIBP52566 201 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 PNLIPRP1P54315 467 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 WNT3P56703 355 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 LRRC37A5PQ49AS3 106 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 Q5BKY6 102 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 METTL3Q86U44 580 aaKnown RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 OR4M1Q8NGD0 313 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 FATE1Q969F0 183 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 TREX2Q9BQ50 279 aaPredicted RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 NDUFB11Q9NX14 153 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 TAS2R10Q9NYW0 307 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 AKAP7Q9P0M2 348 aaPredicted RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 IKZF2Q9UKS7 526 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 AK6Q9Y3D8 172 aaKnown RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 FLRT2O43155 660 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 HOXA2O43364 376 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 ERI3O43414 337 aaKnown RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 CSN2P05814 226 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 SLC35G4P0C7Q5 338 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 ELK1P19419 428 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 PSMD4P55036 377 aaKnown RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 TAS1R1Q7RTX1 841 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 BPHLQ86WA6 291 aaPredicted RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 OR9A1PQ8NGU1 263 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 MOSPD2Q8NHP6 518 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 GRHL3Q8TE85 626 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 SAMD8Q96LT4 415 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 DCLRE1CQ96SD1 692 aaKnown RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 MACROD1Q9BQ69 325 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 MED20Q9H944 212 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 TRAPPC4Q9Y296 219 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 TRBV23OR9-2A0A075B6M9 112 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 A0A0A6YYJ9 748 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 MT-ND5P03915 603 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 NAA10P41227 235 aaPredicted RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 SLC1A3P43003 542 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 PRR5P85299 388 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 TAGLNQ01995 201 aaKnown RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 RGS1Q08116 209 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms