RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 MAPKAP1Q9BPZ7 522 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 LYRM4Q9HD34 91 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 GIN1Q9NXP7 522 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 TAS2R9Q9NYW1 312 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 SERTAD3Q9UJW9 196 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 DAPP1Q9UN19 280 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 POFUT2Q9Y2G5 429 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 ZNF451Q9Y4E5 1061 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 SPACA6W5XKT8 324 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 UNC13CQ8NB66 2214 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 WDR87Q6ZQQ6 2873 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 CLDN24A6NM45 220 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 TMEM229AB2RXF0 380 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 D6RAR5 112 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 hCG_2039718K7EN88 272 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 NTN3O00634 580 aaPredicted RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 MITFO75030 526 aaPredicted RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 AIFM1O95831 613 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 FOLR1P15328 257 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 NBL1P41271 181 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 MAGEA8P43361 318 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 LIM2P55344 173 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 HBA1P69905 142 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 RPP38P78345 283 aaKnown RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 EEF1A2Q05639 463 aaKnown RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 GAB1Q13480 694 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 ZNF846Q147U1 533 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 GPR19Q15760 415 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 FAM214AQ32MH5 1076 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 IFI44LQ53G44 452 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 ANKRD34AQ69YU3 496 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 GALNT5Q7Z7M9 940 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 P2RY8Q86VZ1 359 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 ARMC8Q8IUR7 673 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 NAXDQ8IW45 347 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 GPR135Q8IZ08 494 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 MINDY2Q8NBR6 621 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 GIPC3Q8TF64 312 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 GEMIN6Q8WXD5 167 aaKnown RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 HSPBAP1Q96EW2 488 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 CCDC74BQ96LY2 380 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 DPH2Q9BQC3 489 aaPredicted RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 SPRTNQ9H040 489 aaPredicted RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 RUBCNLQ9H714 662 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 ACOT13Q9NPJ3 140 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 PRDM9Q9NQV7 894 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 FBXO8Q9NRD0 319 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 FGF21Q9NSA1 209 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 RXFP3Q9NSD7 469 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 NDUFAF4Q9P032 175 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 KCMF1Q9P0J7 381 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 LYVE1Q9Y5Y7 322 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 A0A1W2PRB8 838 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 CLDN25C9JDP6 229 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 XPNPEP2O43895 674 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 FOXD2O60548 495 aaPredicted RBP10.97□□□□□ -0.65
VRK3-223ENST00000601341 GCM2O75603 506 aaPredicted RBP10.97□□□□□ -0.65
VRK3-223ENST00000601341 INMTO95050 263 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 NR2F6P10588 404 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 CPN2P22792 545 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 GGT2P36268 569 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 PCBP3P57721 371 aaKnown RBP10.97□□□□□ -0.65
VRK3-223ENST00000601341 TUBA1BP68363 451 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 TNFRSF17Q02223 184 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 ACY1Q03154 408 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 KCNC4Q03721 635 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 PPP1R8Q12972 351 aaKnown RBP10.97□□□□□ -0.65
VRK3-223ENST00000601341 TRA2AQ13595 282 aaKnown RBP eCLIP10.97□□□□□ -0.65
VRK3-223ENST00000601341 RUNX2Q13950 521 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 TBCEQ15813 527 aaPredicted RBP10.97□□□□□ -0.65
VRK3-223ENST00000601341 SLC48A1Q6P1K1 146 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 C16orf87Q6PH81 154 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 TUBA1AQ71U36 451 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 PRSS41Q7RTY9 318 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 SLITRK4Q8IW52 837 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 DEPDC4Q8N2C3 294 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 ZNF540Q8NDQ6 660 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 OR9A4Q8NGU2 314 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 PHF10Q8WUB8 498 aaKnown RBP10.97□□□□□ -0.65
VRK3-223ENST00000601341 SGCDQ92629 289 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 C10orf90Q96M02 699 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 ZNF300Q96RE9 604 aaPredicted RBP10.97□□□□□ -0.65
VRK3-223ENST00000601341 BARD1Q99728 777 aaKnown RBP10.97□□□□□ -0.65
VRK3-223ENST00000601341 CDC6Q99741 560 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 SLC35A5Q9BS91 424 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 DGCR6LQ9BY27 220 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 CCDC90BQ9GZT6 254 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 GPATCH2Q9NW75 528 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 ERGIC3Q9Y282 383 aa10.97□□□□□ -0.65
VRK3-223ENST00000601341 NUP214P35658 2090 aaPredicted RBP10.96□□□□□ -0.65
VRK3-223ENST00000601341 A0A0A6YYC8 382 aaPredicted RBP10.96□□□□□ -0.65
VRK3-223ENST00000601341 ZNF860A6NHJ4 632 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 GLOD5A6NK44 160 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 C4orf47A7E2U8 309 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 H3BMH7 237 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 I3L1I5 382 aaPredicted RBP10.96□□□□□ -0.65
VRK3-223ENST00000601341 SGK494L7N484 410 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 TNFRSF11BO00300 401 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 PDPK1O15530 556 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 NSA2O95478 260 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms