RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ATP6AP2O75787 350 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 ABCD3P28288 659 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 HPCAL1P37235 193 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 GPR85P60893 370 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 EMX2Q04743 252 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 RBPJQ06330 500 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 MLC1Q15049 377 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 OR2L13Q8N349 312 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 FNDC5Q8NAU1 212 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 OR10G3Q8NGC4 313 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 KAT2AQ92830 837 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 ARL8AQ96BM9 186 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 PPCDCQ96CD2 204 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 TUBGCP3Q96CW5 907 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 POM121Q96HA1 1249 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 ATP6V1G3Q96LB4 118 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 PLSCR2Q9NRY7 297 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 ACSS1Q9NUB1 689 aaPredicted RBP14.88□□□□□ -0.03
LSM4-206ENST00000600289 THAP1Q9NVV9 213 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 TAS2R9Q9NYW1 312 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 GIMAP2Q9UG22 337 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 ERRFI1Q9UJM3 462 aaPredicted RBP14.88□□□□□ -0.03
LSM4-206ENST00000600289 CNOT11Q9UKZ1 510 aaKnown RBP14.88□□□□□ -0.03
LSM4-206ENST00000600289 C19orf53Q9UNZ5 99 aaPredicted RBP14.88□□□□□ -0.03
LSM4-206ENST00000600289 SLC5A6Q9Y289 635 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 ZNF835Q9Y2P0 537 aa14.88□□□□□ -0.03
LSM4-206ENST00000600289 A0A0G2JMM0 328 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 A0A1W2PPB8 328 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 A0A1W2PRS3 328 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 KIR3DP1A8MWS1 328 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 ACOT7O00154 380 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 TFECO14948 347 aaPredicted RBP14.87□□□□□ -0.03
LSM4-206ENST00000600289 SCAMP2O15127 329 aaKnown RBP14.87□□□□□ -0.03
LSM4-206ENST00000600289 ASNA1O43681 348 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 PPM1BO75688 479 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 KCNK10P57789 538 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 RPP38P78345 283 aaKnown RBP14.87□□□□□ -0.03
LSM4-206ENST00000600289 FOXO1Q12778 655 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 ZNF385BQ569K4 471 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 ATG16L1Q676U5 607 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 Q6ZPB1 254 aaPredicted RBP14.87□□□□□ -0.03
LSM4-206ENST00000600289 FAM47EQ6ZV65 393 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 GHDCQ8N2G8 530 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 LIX1Q8N485 282 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 NATD1Q8N6N6 113 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 ZFP28Q8NHY6 868 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 SPPL2AQ8TCT8 520 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 RELTQ969Z4 430 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 ELP4Q96EB1 424 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 ZBED6CLQ96FA7 236 aaPredicted RBP14.87□□□□□ -0.03
LSM4-206ENST00000600289 TTTY12Q9BZ98 90 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 ZDHHC11Q9H8X9 412 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 MEAF6Q9HAF1 191 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 IL1RL2Q9HB29 575 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 PROK2Q9HC23 129 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 NOP53Q9NZM5 478 aaKnown RBP14.87□□□□□ -0.03
LSM4-206ENST00000600289 NTMQ9P121 344 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 BAIAP2L1Q9UHR4 511 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 MAPRE3Q9UPY8 281 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 EIF3LQ9Y262 564 aaKnown RBP14.87□□□□□ -0.03
LSM4-206ENST00000600289 NAV3Q8IVL0 2385 aa14.87□□□□□ -0.03
LSM4-206ENST00000600289 GTF3C1Q12789 2109 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 A0A1B0GUH1 482 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 NPIPA5E9PKD4 350 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 UPK1AO00322 258 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 LRATO95237 230 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 CT45A8P0DMV1 189 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 CT45A9P0DMV2 189 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 PRPS1L1P21108 318 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 MC3RP41968 323 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 PTGR1Q14914 329 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 PDCD2Q16342 344 aaPredicted RBP14.86□□□□□ -0.03
LSM4-206ENST00000600289 CT45A2Q5DJT8 189 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 CMPK2Q5EBM0 449 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 IL23RQ5VWK5 629 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 TMEM107Q6UX40 140 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 NUP54Q7Z3B4 507 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 SLC22A16Q86VW1 577 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 CHERPQ8IWX8 916 aaKnown RBP14.86□□□□□ -0.03
LSM4-206ENST00000600289 RIMKLAQ8IXN7 391 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 SLC34A3Q8N130 599 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 FAM13CQ8NE31 585 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 CLHC1Q8NHS4 586 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 MGARPQ8TDB4 240 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 HOXB13Q92826 284 aaPredicted RBP14.86□□□□□ -0.03
LSM4-206ENST00000600289 HGDQ93099 445 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 GFM2Q969S9 779 aaKnown RBP14.86□□□□□ -0.03
LSM4-206ENST00000600289 C1orf50Q9BV19 199 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 AKTIPQ9H8T0 292 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 ANKRA2Q9H9E1 313 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 FOLH1BQ9HBA9 442 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 NPIPA1Q9UND3 350 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 OSGIN2Q9Y236 505 aa14.86□□□□□ -0.03
LSM4-206ENST00000600289 TACC2O95359 2948 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 OR6C70A6NIJ9 312 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 TTC36A6NLP5 189 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 SLCO1B7G3V0H7 640 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 AKAP10O43572 662 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 ABCB7O75027 752 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 ERN1O75460 977 aaKnown RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms