RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 MYO1GB0I1T2 1018 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 FAM47E-STBD1D6RA91 191 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 NPIPB8E9PQR5 432 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 AQP7O14520 342 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 BIRC5O15392 142 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 PLOD3O60568 738 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 ERN1O75460 977 aaKnown RBP12.99□□□□□ -0.33
LIG1-218ENST00000599322 ZWINTO95229 277 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 CBX7O95931 251 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 CHRNGP07510 517 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 HOXD4P09016 255 aaPredicted RBP12.99□□□□□ -0.33
LIG1-218ENST00000599322 ELAVL4P26378 380 aaKnown RBP12.99□□□□□ -0.33
LIG1-218ENST00000599322 HPCAL1P37235 193 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 CLK3P49761 638 aaKnown RBP12.99□□□□□ -0.33
LIG1-218ENST00000599322 PSMD4P55036 377 aaKnown RBP12.99□□□□□ -0.33
LIG1-218ENST00000599322 ZNF155Q12901 538 aaPredicted RBP12.99□□□□□ -0.33
LIG1-218ENST00000599322 MAD2L1Q13257 205 aaPredicted RBP12.99□□□□□ -0.33
LIG1-218ENST00000599322 NNATQ16517 81 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 SLC30A6Q6NXT4 461 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 LRIG3Q6UXM1 1119 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 ZCCHC23Q6ZST2 131 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 ACAD11Q709F0 780 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 TRILQ7L0X0 811 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 CA5BP1Q8WTZ4 195 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 MTERF3Q96E29 417 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 RILPQ96NA2 401 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 COL21A1Q96P44 957 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 PRPF18Q99633 342 aaKnown RBP12.99□□□□□ -0.33
LIG1-218ENST00000599322 ANGPTL4Q9BY76 406 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 REEP4Q9H6H4 257 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 SH2D2AQ9NP31 389 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 PLSCR2Q9NRY7 297 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 CNOT11Q9UKZ1 510 aaKnown RBP12.99□□□□□ -0.33
LIG1-218ENST00000599322 DNAJC15Q9Y5T4 150 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 ACTL7BQ9Y614 415 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 LRBAP50851 2863 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 TTC36A6NLP5 189 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 PIP5K1BO14986 540 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 TO15178 435 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 PDPK1O15530 556 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 TYROBPO43914 113 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 WISP2O76076 250 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 IGHG3P01860 377 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 ABCB1P08183 1280 aaPredicted RBP12.98□□□□□ -0.33
LIG1-218ENST00000599322 GRK2P25098 689 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 CASP3P42574 277 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 SERPINB4P48594 390 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 EMDP50402 254 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 MANFP55145 182 aaKnown RBP12.98□□□□□ -0.33
LIG1-218ENST00000599322 FOXO1Q12778 655 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 SNTA1Q13424 505 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 CEBPEQ15744 281 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 VPS26BQ4G0F5 336 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 GXYLT1Q4G148 440 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 HHATQ5VTY9 493 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 FAM219BQ5XKK7 198 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 SP5Q6BEB4 398 aaPredicted RBP12.98□□□□□ -0.33
LIG1-218ENST00000599322 ZNF585AQ6P3V2 769 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 OR1J4Q8NGS1 313 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 CEP70Q8NHQ1 597 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 ITLN2Q8WWU7 325 aaPredicted RBP12.98□□□□□ -0.33
LIG1-218ENST00000599322 ASB5Q8WWX0 329 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 RND1Q92730 232 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 GFM2Q969S9 779 aaKnown RBP12.98□□□□□ -0.33
LIG1-218ENST00000599322 ZBED6CLQ96FA7 236 aaPredicted RBP12.98□□□□□ -0.33
LIG1-218ENST00000599322 TSSK3Q96PN8 268 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 PAIP2Q9BPZ3 127 aaKnown RBP12.98□□□□□ -0.33
LIG1-218ENST00000599322 TNFRSF12AQ9NP84 129 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 ACKR4Q9NPB9 350 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 ATAD3AQ9NVI7 634 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 ALKBH4Q9NXW9 302 aa12.98□□□□□ -0.33
LIG1-218ENST00000599322 EIF3LQ9Y262 564 aaKnown RBP12.98□□□□□ -0.33
LIG1-218ENST00000599322 GPR55Q9Y2T6 319 aaPredicted RBP12.98□□□□□ -0.33
LIG1-218ENST00000599322 A0A1B0GVC2 190 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 OR6C70A6NIJ9 312 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 PLOD2O00469 737 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 AKAP10O43572 662 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 WDR1O75083 606 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 PEX11AO75192 247 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 LYPLA1O75608 230 aaPredicted RBP12.97□□□□□ -0.33
LIG1-218ENST00000599322 LRATO95237 230 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 CLDN14O95500 239 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 SERPINE1P05121 402 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 PRPS2P11908 318 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 GABRA1P14867 456 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 DUSP2Q05923 314 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 KIAA0040Q15053 153 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 RFTN2Q52LD8 501 aaPredicted RBP12.97□□□□□ -0.33
LIG1-218ENST00000599322 TMEM107Q6UX40 140 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 C3P1Q6ZMU1 363 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 Q6ZSR9 355 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 SZRD1Q7Z422 152 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 EXOC3L1Q86VI1 746 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 SLC44A2Q8IWA5 706 aaPredicted RBP12.97□□□□□ -0.33
LIG1-218ENST00000599322 NATD1Q8N6N6 113 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 FNDC5Q8NAU1 212 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 OR10Q1Q8NGQ4 319 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIG1-218ENST00000599322 TMBIM1Q969X1 311 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 SDCCAG3Q96C92 435 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms