RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 TRIM13O60858 407 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 UGT2B11O75310 529 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 SEC22BO75396 215 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 REM1O75628 298 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 RSL1D1O76021 490 aaKnown RBP13.78□□□□□ -0.2
LIG1-215ENST00000597901 CT45A8P0DMV1 189 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 CT45A9P0DMV2 189 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 PTGDSP41222 190 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 ZFP36L2P47974 494 aaKnown RBP13.78□□□□□ -0.2
LIG1-215ENST00000597901 VSNL1P62760 191 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 PLCXD2Q0VAA5 305 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 KIAA0040Q15053 153 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 CT45A2Q5DJT8 189 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 NOXRED1Q6NXP6 359 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 TMEM81Q6P7N7 255 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 MEX3BQ6ZN04 569 aaKnown RBP13.78□□□□□ -0.2
LIG1-215ENST00000597901 BANPQ8N9N5 519 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 OR7G2Q8NG99 324 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 OR1J4Q8NGS1 313 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 TMBIM1Q969X1 311 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 TREX2Q9BQ50 279 aaPredicted RBP13.78□□□□□ -0.2
LIG1-215ENST00000597901 Q9UFV3 132 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 EXO1Q9UQ84 846 aaKnown RBP13.78□□□□□ -0.2
LIG1-215ENST00000597901 C15orf41Q9Y2V0 281 aa13.78□□□□□ -0.2
LIG1-215ENST00000597901 POLR3HQ9Y535 204 aaPredicted RBP13.78□□□□□ -0.2
LIG1-215ENST00000597901 CRYBG3Q68DQ2 2970 aa13.77□□□□□ -0.2
LIG1-215ENST00000597901 C15orf38-AP3S2A0A0A6YYH1 394 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 FAM90A27PA6NNH2 459 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 AHRRA9YTQ3 701 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 SLC28A1O00337 649 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 AZIN1O14977 448 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 NUDT17P0C025 328 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 PTPN6P29350 595 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 ADH7P40394 386 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 TFF3Q07654 80 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 ZNF763Q0D2J5 394 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 SNTA1Q13424 505 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 TOMM20Q15388 145 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 ERCC6LQ2NKX8 1250 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 EIPR1Q53HC9 387 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 CLEC6AQ6EIG7 209 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 VASNQ6EMK4 673 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 ANGPTL8Q6UXH0 198 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 Q6ZSR9 355 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 TRABD2AQ86V40 505 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 LIX1LQ8IVB5 337 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 ULK2Q8IYT8 1036 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 FAM9CQ8IZT9 166 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 CDC26Q8NHZ8 85 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 TMCO6Q96DC7 493 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 METTL2AQ96IZ6 378 aaKnown RBP13.77□□□□□ -0.21
LIG1-215ENST00000597901 VSTM2LQ96N03 204 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 COL21A1Q96P44 957 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 BTBD9Q96Q07 612 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 ROPN1BQ9BZX4 212 aaPredicted RBP13.77□□□□□ -0.21
LIG1-215ENST00000597901 ROPN1Q9HAT0 212 aaPredicted RBP13.77□□□□□ -0.21
LIG1-215ENST00000597901 FOLH1BQ9HBA9 442 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 MYNNQ9NPC7 610 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 NPDC1Q9NQX5 325 aaPredicted RBP13.77□□□□□ -0.21
LIG1-215ENST00000597901 MID2Q9UJV3 735 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 SLC6A5Q9Y345 797 aa13.77□□□□□ -0.21
LIG1-215ENST00000597901 OR6C70A6NIJ9 312 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 ERN1O75460 977 aaKnown RBP13.76□□□□□ -0.21
LIG1-215ENST00000597901 EPPINO95925 133 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 JUNP05412 331 aaKnown RBP13.76□□□□□ -0.21
LIG1-215ENST00000597901 BMP7P18075 431 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 PRPH2P23942 346 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 ALDH3A1P30838 453 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 SSTR2P30874 369 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 NCBP2P52298 156 aaKnown RBP eCLIP13.76□□□□□ -0.21
LIG1-215ENST00000597901 CORO7P57737 925 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 CRYZQ08257 329 aaKnown RBP13.76□□□□□ -0.21
LIG1-215ENST00000597901 PCLAFQ15004 111 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 WIPI1Q5MNZ9 446 aaPredicted RBP13.76□□□□□ -0.21
LIG1-215ENST00000597901 SEM1Q6ZVN7 128 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 RIBC1Q8N443 379 aaPredicted RBP13.76□□□□□ -0.21
LIG1-215ENST00000597901 WDSUB1Q8N9V3 476 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 SLC35A4Q96G79 324 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 EGLN2Q96KS0 407 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 ADOQ96SZ5 270 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 TRMOQ9BU70 441 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 IQCGQ9H095 443 aaKnown RBP13.76□□□□□ -0.21
LIG1-215ENST00000597901 STMN4Q9H169 189 aaPredicted RBP13.76□□□□□ -0.21
LIG1-215ENST00000597901 GLIPR2Q9H4G4 154 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 GALNT9Q9HCQ5 603 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 MIEF1Q9NQG6 463 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 C1orf109Q9NX04 203 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 TAS2R9Q9NYW1 312 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 PTGDR2Q9Y5Y4 395 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 CREBBPQ92793 2442 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 EML6Q6ZMW3 1958 aa13.76□□□□□ -0.21
LIG1-215ENST00000597901 MYO9AB2RTY4 2548 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 ZNF407Q9C0G0 2248 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 A0A087WV62 115 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 FAM47E-STBD1D6RA91 191 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 NPIPB8E9PQR5 432 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 PLOD2O00469 737 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 SNPHO15079 494 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 RGS14O43566 566 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 TSPAN2O60636 221 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms