RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	UBQLN3	Q9H347	655 aa		11.54	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	DTX4	Q9Y2E6	619 aa		11.54	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	HRH3	Q9Y5N1	445 aa		11.54	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	CACNA1D	Q01668	2161 aa		11.54	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	EXPH5	Q8NEV8	1989 aa		11.54	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	SEC22B	O75396	215 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	RFPL3S	P0C7P2	107 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	COX6B1	P14854	86 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	NTS	P30990	170 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	KRT20	P35900	424 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	MASP1	P48740	699 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	CDK9	P50750	372 aa	Known RBP	11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	PNLIPRP2	P54317	469 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	MRPS35	P82673	323 aa	Known RBP	11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	LTB4R	Q15722	352 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	NHSL2	Q5HYW2	709 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	KANK2	Q63ZY3	851 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	TIGD3	Q6B0B8	471 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	SCIMP	Q6UWF3	145 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	TMEM64	Q6YI46	380 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	B3GNT6	Q6ZMB0	384 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	C3P1	Q6ZMU1	363 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	CROCCP2	Q86T23	111 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	PM20D2	Q8IYS1	436 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	CLYBL	Q8N0X4	340 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	LIX1	Q8N485	282 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	ACBD4	Q8NC06	268 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	OR9A2	Q8NGT5	310 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	SDCCAG3	Q96C92	435 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	MTERF3	Q96E29	417 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	FCRL1	Q96LA6	429 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	COL21A1	Q96P44	957 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	EBPL	Q9BY08	206 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	EXO5	Q9H790	373 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	METTL7A	Q9H8H3	244 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	LRTM1	Q9HBL6	345 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	SLC24A3	Q9HC58	644 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	PNPLA3	Q9NST1	481 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	C15orf41	Q9Y2V0	281 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	LIPG	Q9Y5X9	500 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	DCHS2	Q6V1P9	2916 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	NIN	Q8N4C6	2090 aa		11.53	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	CREBBP	Q92793	2442 aa		11.52	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	PKDREJ	Q9NTG1	2253 aa		11.52	□□□□□ -0.56
CDK5RAP3-222	ENST00000581708	AHRR	A9YTQ3	701 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	ERN1	O75460	977 aa	Known RBP	11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	CBR3	O75828	277 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	SNUPN	O95149	360 aa	Known RBP	11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	CELA3A	P09093	270 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	CT45A8	P0DMV1	189 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	CT45A9	P0DMV2	189 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	GDF1	P27539	372 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	ALDH3A1	P30838	453 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	GCK	P35557	465 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	ASMT	P46597	345 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	CYP27C1	Q4G0S4	372 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	CT45A2	Q5DJT8	189 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	FNDC7	Q5VTL7	733 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	CLEC6A	Q6EIG7	209 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	ZNF585A	Q6P3V2	769 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708		Q6ZSR9	355 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	GDF7	Q7Z4P5	450 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	KIRREL3	Q8IZU9	778 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	OR2L13	Q8N349	312 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	MARVELD2	Q8N4S9	558 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	OR1J4	Q8NGS1	313 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	TCP10L	Q8TDR4	215 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	JSRP1	Q96MG2	331 aa	Predicted RBP	11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	FAM111A	Q96PZ2	611 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	TREX2	Q9BQ50	279 aa	Predicted RBP	11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	TTYH2	Q9BSA4	534 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	OSBPL11	Q9BXB4	747 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	ENKD1	Q9H0I2	346 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	C12orf65	Q9H3J6	166 aa	Known RBP	11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	HHATL	Q9HCP6	504 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	SSU72	Q9NP77	194 aa	Known RBP	11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	TNFRSF12A	Q9NP84	129 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	MRTO4	Q9UKD2	239 aa	Known RBP	11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	RAB21	Q9UL25	225 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	C19orf53	Q9UNZ5	99 aa	Predicted RBP	11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	TRAF6	Q9Y4K3	522 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	DNAJC15	Q9Y5T4	150 aa		11.52	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	PRAMEF25	A6NGN4	478 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	TMEM114	B3SHH9	223 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	SNPH	O15079	494 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	ZNHIT1	O43257	154 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	TYROBP	O43914	113 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	ICOSLG	O75144	302 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	UGT2B11	O75310	529 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	REM1	O75628	298 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	PSMG1	O95456	288 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	ACTL6A	O96019	429 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	ENDOU	P21128	410 aa	Known RBP	11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	MAPK1	P28482	360 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	GRN	P28799	593 aa	Known RBP	11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	PTPN6	P29350	595 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	RPL3	P39023	403 aa	Known RBP	11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	NCBP2	P52298	156 aa	Known RBP eCLIP	11.51	□□□□□ -0.57	5e-7	■■■■□ 23.5
CDK5RAP3-222	ENST00000581708	PMPCA	Q10713	525 aa		11.51	□□□□□ -0.57
CDK5RAP3-222	ENST00000581708	UGT3A2	Q3SY77	523 aa		11.51	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms