RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PLEKHG7Q6ZR37 379 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 VN1R4Q7Z5H5 301 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 IQCHQ86VS3 1027 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 CYP4Z2PQ8N1L4 340 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 FAM26EQ8N5C1 309 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 NUP43Q8NFH3 380 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 OR9A2Q8NGT5 310 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 LCN9Q8WX39 176 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 ASB12Q8WXK4 309 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 OPALINQ96PE5 141 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 GPA33Q99795 319 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 POLDIP3Q9BY77 421 aaKnown RBP9.47□□□□□ -0.89
VPS53-220ENST00000576149 QRSL1Q9H0R6 528 aaKnown RBP9.47□□□□□ -0.89
VPS53-220ENST00000576149 SLC38A1Q9H2H9 487 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 FBRSQ9HAH7 460 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 C3orf14Q9HBI5 128 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 TRNAU1APQ9NX07 287 aaKnown RBP9.47□□□□□ -0.89
VPS53-220ENST00000576149 LYARQ9NX58 379 aaKnown RBP9.47□□□□□ -0.89
VPS53-220ENST00000576149 TVP23BQ9NYZ1 205 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 CLEC2DQ9UHP7 191 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 MKLN1Q9UL63 735 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 CCDC163A0A0D9SF12 145 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 SYT5O00445 386 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 PRKYO43930 277 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 KIAA0513O60268 411 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 ALOX5P09917 674 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 COL9A1P20849 921 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 NDUFS1P28331 727 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 GIPRP48546 466 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 PCYT1AP49585 367 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 LBX1P52954 281 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 CLDN2P57739 230 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 KIAA1024LP59773 190 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 BTN3A2P78410 334 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 TGM3Q08188 693 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 SHHQ15465 462 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 TPRG1LQ5T0D9 272 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 C11orf74Q86VG3 221 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 NRROSQ86YC3 692 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 SLC34A3Q8N130 599 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 IQCF1Q8N6M8 205 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 KCT2Q8NC54 265 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 OR1E3Q8WZA6 343 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 GAL3ST3Q96A11 431 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 TRNT1Q96Q11 434 aaKnown RBP9.47□□□□□ -0.89
VPS53-220ENST00000576149 HHATLQ9HCP6 504 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 TRPV5Q9NQA5 729 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 LIPT1Q9Y234 373 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 ZNF780BQ9Y6R6 833 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 NINQ8N4C6 2090 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 A0A0B4J203 849 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 ISPDA4D126 451 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 SAGE2PA6NJ88 616 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 FAM25EA8MYX2 175 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 BTN3A3O00478 584 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 GPX5O75715 221 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 UPK1BO75841 260 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 CKMT1AP12532 417 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 HOXB2P14652 356 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 GSTM3P21266 225 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 AK4P27144 223 aaPredicted RBP9.46□□□□□ -0.89
VPS53-220ENST00000576149 RPS15AP62244 130 aaKnown RBP9.46□□□□□ -0.89
VPS53-220ENST00000576149 EFNB1P98172 346 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 CDK5Q00535 292 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 CHRNEQ04844 493 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.46□□□□□ -0.89
VPS53-220ENST00000576149 HYAL1Q12794 435 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 DNASE1L3Q13609 305 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 GINS1Q14691 196 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 SPHARQ15513 63 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 ZNF311Q5JNZ3 666 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 FIP1L1Q6UN15 594 aaKnown RBP9.46□□□□□ -0.89
VPS53-220ENST00000576149 ENPP7Q6UWV6 458 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 BCDIN3DQ7Z5W3 292 aaKnown RBP9.46□□□□□ -0.89
VPS53-220ENST00000576149 NANOGP1Q8N7R0 232 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 FGF11Q92914 225 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 GIMAP5Q96F15 307 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 C10orf90Q96M02 699 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 FCRL4Q96PJ5 515 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 ARHGDIGQ99819 225 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 TSSK6Q9BXA6 273 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 RACGAP1Q9H0H5 632 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 ANKRA2Q9H9E1 313 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 CTPS2Q9NRF8 586 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 ZNF624Q9P2J8 865 aaPredicted RBP9.46□□□□□ -0.89
VPS53-220ENST00000576149 TRANK1O15050 2925 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 MYO10Q9HD67 2058 aa9.46□□□□□ -0.89
VPS53-220ENST00000576149 A0A087WUU8 490 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 TLX2O43763 284 aaPredicted RBP9.46□□□□□ -0.9
VPS53-220ENST00000576149 CSO75390 466 aaKnown RBP9.46□□□□□ -0.9
VPS53-220ENST00000576149 ALPPP05187 535 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 NR2F6P10588 404 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 ENDOUP21128 410 aaKnown RBP9.46□□□□□ -0.9
VPS53-220ENST00000576149 S100A5P33763 92 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 RPS3AP61247 264 aaKnown RBP9.46□□□□□ -0.9
VPS53-220ENST00000576149 ZNF45Q02386 682 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 PRKCDQ05655 676 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 RGS1Q08116 209 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 INAVAQ3KP66 663 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms