RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 WFDC11Q8NEX6 87 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 OR52R1Q8NGF1 315 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 SLC44A1Q8WWI5 657 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 DACH2Q96NX9 599 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 YIPF4Q9BSR8 244 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 RBM24Q9BX46 236 aaKnown RBP19.16■□□□□ 0.66
VPS53-216ENST00000574029 ELOVL6Q9H5J4 265 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 ACSS3Q9H6R3 686 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 FARSBQ9NSD9 589 aaKnown RBP19.16■□□□□ 0.66
VPS53-216ENST00000574029 KLRF1Q9NZS2 232 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 XPR1Q9UBH6 696 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 A0A1B0GTL3 188 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 PRAMEF25A6NGN4 478 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 SMIM24O75264 130 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 RPS17P08708 135 aaKnown RBP19.15■□□□□ 0.66
VPS53-216ENST00000574029 CNTFP26441 200 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 HOXC12P31275 282 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 PHBP35232 272 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 EMDP50402 254 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 GFRA1P56159 465 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 TRMT12Q53H54 448 aaKnown RBP19.15■□□□□ 0.66
VPS53-216ENST00000574029 UBAP2Q5T6F2 1119 aaKnown RBP19.15■□□□□ 0.66
VPS53-216ENST00000574029 ENPP6Q6UWR7 440 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 TRIM42Q8IWZ5 723 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 CEP112Q8N8E3 955 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 NOA1Q8NC60 698 aaKnown RBP19.15■□□□□ 0.66
VPS53-216ENST00000574029 ADCY4Q8NFM4 1077 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 OR14L1PQ8NHC6 308 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 WNT2BQ93097 391 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 ZNF681Q96N22 645 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 G6PC3Q9BUM1 346 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 FUT8Q9BYC5 575 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 BRF2Q9HAW0 419 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 GALNT8Q9NY28 637 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 EHD3Q9NZN3 535 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 PRODH2Q9UF12 536 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 PSME2Q9UL46 239 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 ACANP16112 2415 aa19.15■□□□□ 0.66
VPS53-216ENST00000574029 ESYT3A0FGR9 886 aa19.14■□□□□ 0.65
VPS53-216ENST00000574029 FRG2CA6NGY1 282 aa19.14■□□□□ 0.65
VPS53-216ENST00000574029 H0Y3Z8 333 aa19.14■□□□□ 0.65
VPS53-216ENST00000574029 PDYNP01213 254 aa19.14■□□□□ 0.65
VPS53-216ENST00000574029 TRA2BP62995 288 aaKnown RBP19.14■□□□□ 0.65
VPS53-216ENST00000574029 SRYQ05066 204 aa19.14■□□□□ 0.65
VPS53-216ENST00000574029 ZNF483Q8TF39 744 aaPredicted RBP19.14■□□□□ 0.65
VPS53-216ENST00000574029 KLHL29Q96CT2 875 aa19.14■□□□□ 0.65
VPS53-216ENST00000574029 CNRIP1Q96F85 164 aaPredicted RBP19.14■□□□□ 0.65
VPS53-216ENST00000574029 NINJ2Q9NZG7 142 aa19.14■□□□□ 0.65
VPS53-216ENST00000574029 CLCF1Q9UBD9 225 aa19.14■□□□□ 0.65
VPS53-216ENST00000574029 GPR55Q9Y2T6 319 aaPredicted RBP19.14■□□□□ 0.65
VPS53-216ENST00000574029 MED12Q93074 2177 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 A0A1W2PPR1 153 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 OR6C70A6NIJ9 312 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 PPP6CO00743 305 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 OTCP00480 354 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 COL6A2P12110 1019 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 PCSK2P16519 638 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 CD53P19397 219 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 LHX2P50458 406 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 HMGCS1Q01581 520 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 LTB4RQ15722 352 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 TSNAXIP1Q2TAA8 658 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 FAM180BQ6P0A1 224 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 LETMD1Q6P1Q0 360 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 RPS27LQ71UM5 84 aaKnown RBP19.13■□□□□ 0.65
VPS53-216ENST00000574029 LUZP2Q86TE4 346 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 BIVMQ86UB2 503 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 IFNEQ86WN2 208 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 PLCZ1Q86YW0 608 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 RDH11Q8TC12 318 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 SELENOMQ8WWX9 145 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 SMPDL3BQ92485 455 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 INTS12Q96CB8 462 aaKnown RBP19.13■□□□□ 0.65
VPS53-216ENST00000574029 TMCO6Q96DC7 493 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 SLC35A4Q96G79 324 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 COL21A1Q96P44 957 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 FAIM2Q9BWQ8 316 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 ACBD3Q9H3P7 528 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 PIGMQ9H3S5 423 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 NEUROD4Q9HD90 331 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 DMGDHQ9UI17 866 aaKnown RBP19.13■□□□□ 0.65
VPS53-216ENST00000574029 SNX6Q9UNH7 406 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 ZNF780BQ9Y6R6 833 aa19.13■□□□□ 0.65
VPS53-216ENST00000574029 MAP1AP78559 2803 aaPredicted RBP19.13■□□□□ 0.65
VPS53-216ENST00000574029 SH3D21A4FU49 640 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 DRD2P14416 443 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 CHMP24386 653 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 SRD5A2P31213 254 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 STARP49675 285 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 EEF1A1P68104 462 aaKnown RBP19.12■□□□□ 0.65
VPS53-216ENST00000574029 MRPS35P82673 323 aaKnown RBP19.12■□□□□ 0.65
VPS53-216ENST00000574029 GAB1Q13480 694 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 EEF1A1P5Q5VTE0 462 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 SCIMPQ6UWF3 145 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 PLXDC2Q6UX71 529 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 KRTAP1-3Q8IUG1 177 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 RELL1Q8IUW5 271 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 C1orf52Q8N6N3 182 aaKnown RBP19.12■□□□□ 0.65
VPS53-216ENST00000574029 ZNF675Q8TD23 568 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 TMBIM1Q969X1 311 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms