RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 BTKQ06187 659 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 PCLAFQ15004 111 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 C1orf185Q5T7R7 199 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 WLSQ5T9L3 541 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 NPSR1Q6W5P4 371 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 RNF165Q6ZSG1 346 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 ULK2Q8IYT8 1036 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 C4orf33Q8N1A6 199 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 OR7G2Q8NG99 324 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 OR2W6PQ8NHA6 318 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 FAM76AQ8TAV0 307 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 KAT2AQ92830 837 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 EXOSC8Q96B26 276 aaKnown RBP13.59□□□□□ -0.23
CLN3-213ENST00000565047 SLC35A4Q96G79 324 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 LURAP1Q96LR2 239 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 JSRP1Q96MG2 331 aaPredicted RBP13.59□□□□□ -0.23
CLN3-213ENST00000565047 TIMP4Q99727 224 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 PRDM14Q9GZV8 571 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 LDAHQ9H6V9 325 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 PRODH2Q9UF12 536 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 ACAD8Q9UKU7 415 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 GNG14A0A1W2PPG7 69 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 CCDC151A5D8V7 595 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 TSPAN2O60636 221 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 ICOSLGO75144 302 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 BCAS2O75934 225 aaPredicted RBP13.58□□□□□ -0.24
CLN3-213ENST00000565047 RSL1D1O76021 490 aaKnown RBP13.58□□□□□ -0.24
CLN3-213ENST00000565047 PSMG1O95456 288 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 GABRA1P14867 456 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 VSNL1P62760 191 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 ZNF763Q0D2J5 394 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 SNTA1Q13424 505 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 RIPPLY2Q5TAB7 128 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 C6orf163Q5TEZ5 329 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 LIPMQ5VYY2 423 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 VASNQ6EMK4 673 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 POMZP3Q6PJE2 187 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 Q6ZSR9 355 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 PACS2Q86VP3 889 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 C10orf107Q8IVU9 208 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 SAMD14Q8IZD0 417 aaPredicted RBP13.58□□□□□ -0.24
CLN3-213ENST00000565047 BANPQ8N9N5 519 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 WDSUB1Q8N9V3 476 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 METTL2AQ96IZ6 378 aaKnown RBP13.58□□□□□ -0.24
CLN3-213ENST00000565047 FCRL1Q96LA6 429 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 GATA5Q9BWX5 397 aaPredicted RBP13.58□□□□□ -0.24
CLN3-213ENST00000565047 TUBB1Q9H4B7 451 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 MYNNQ9NPC7 610 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 B4GALT7Q9UBV7 327 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 PTGDR2Q9Y5Y4 395 aa13.58□□□□□ -0.24
CLN3-213ENST00000565047 C2orf72A6NCS6 295 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 OR6C70A6NIJ9 312 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 SMIM23A6NLE4 172 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 COPEO14579 308 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 SNPHO15079 494 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 EPPINO95925 133 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 UROSP10746 265 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 TACR1P25103 407 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 ELAVL4P26378 380 aaKnown RBP13.57□□□□□ -0.24
CLN3-213ENST00000565047 GDF1P27539 372 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 GAS1P54826 345 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 CORO7P57737 925 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 RPP38P78345 283 aaKnown RBP13.57□□□□□ -0.24
CLN3-213ENST00000565047 PSG6Q00889 435 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 C2orf80Q0P641 193 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 UGT3A2Q3SY77 523 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 EIPR1Q53HC9 387 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 DCST1Q5T197 706 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 CLEC6AQ6EIG7 209 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 NOXRED1Q6NXP6 359 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 SLC30A6Q6NXT4 461 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 TRABD2AQ86V40 505 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 DMRTC2Q8IXT2 367 aaPredicted RBP13.57□□□□□ -0.24
CLN3-213ENST00000565047 OR2T11Q8NH01 316 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 TMBIM1Q969X1 311 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 EGLN2Q96KS0 407 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 SHCBP1LQ9BZQ2 653 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 GALNT9Q9HCQ5 603 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 LGALS13Q9UHV8 139 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 WBP11Q9Y2W2 641 aaKnown RBP13.57□□□□□ -0.24
CLN3-213ENST00000565047 POLR3HQ9Y535 204 aaPredicted RBP13.57□□□□□ -0.24
CLN3-213ENST00000565047 FREM3P0C091 2139 aa13.57□□□□□ -0.24
CLN3-213ENST00000565047 A0A087WV62 115 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 FAM90A27PA6NNH2 459 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 AHRRA9YTQ3 701 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 PLOD2O00469 737 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 BMP7P18075 431 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 SSTR2P30874 369 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 CEACAM8P31997 349 aaPredicted RBP13.56□□□□□ -0.24
CLN3-213ENST00000565047 MPIP34949 423 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 ZFP36L2P47974 494 aaKnown RBP13.56□□□□□ -0.24
CLN3-213ENST00000565047 DLX5P56178 289 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 PLCXD2Q0VAA5 305 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 ACSF3Q4G176 576 aaPredicted RBP13.56□□□□□ -0.24
CLN3-213ENST00000565047 SPDYAQ5MJ70 313 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 MEX3BQ6ZN04 569 aaKnown RBP13.56□□□□□ -0.24
CLN3-213ENST00000565047 NAXEQ8NCW5 288 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 OR4N2Q8NGD1 307 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 OR6Y1Q8NGX8 325 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 AENQ8WTP8 325 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms