RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 OTULINQ96BN8 352 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 WACQ9BTA9 647 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 MS4A8Q9BY19 250 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 PPP1R3EQ9H7J1 279 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 SLC9A8Q9Y2E8 581 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 A0A087WUU8 490 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ISM1B1AKI9 464 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 SEC14L5O43304 696 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 LYRM1O43325 122 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ERAL1O75616 437 aaKnown RBP12.43□□□□□ -0.42
CLN3-210ENST00000563874 CHRM4P08173 479 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 IFI30P13284 250 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ACADLP28330 430 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 DEFB103AP81534 67 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 COX10Q12887 443 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 FAM209AQ5JX71 171 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 SLC30A6Q6NXT4 461 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 DEDD2Q8WXF8 326 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 FAM46AQ96IP4 442 aaKnown RBP12.43□□□□□ -0.42
CLN3-210ENST00000563874 ART5Q96L15 291 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 GLIPR2Q9H4G4 154 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 TRIM45Q9H8W5 580 aaPredicted RBP12.43□□□□□ -0.42
CLN3-210ENST00000563874 GALNT9Q9HCQ5 603 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 TM7SF3Q9NS93 570 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 RBFOX1Q9NWB1 397 aaKnown RBP12.43□□□□□ -0.42
CLN3-210ENST00000563874 NFKBIL1Q9UBC1 381 aaPredicted RBP12.43□□□□□ -0.42
CLN3-210ENST00000563874 A0A1B0GVC2 190 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 A6NIN4 97 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 STK25O00506 426 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ZNF780AO75290 641 aaPredicted RBP12.43□□□□□ -0.42
CLN3-210ENST00000563874 ACADMP11310 421 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 PPP2R1BP30154 601 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 GABRA5P31644 462 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 INPP1P49441 399 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 EFNB1P98172 346 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 RAB40BQ12829 278 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 LRRC32Q14392 662 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 BTBD16Q32M84 506 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ZNF57Q68EA5 555 aaPredicted RBP12.43□□□□□ -0.42
CLN3-210ENST00000563874 SLC27A4Q6P1M0 643 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 C1orf94Q6P1W5 598 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 SLC36A4Q6YBV0 504 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 PRICKLE2Q7Z3G6 844 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 FAM20CQ8IXL6 584 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 IL17RCQ8NAC3 791 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 NEIL3Q8TAT5 605 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 RASSF5Q8WWW0 418 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ZG16BQ96DA0 208 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ATF6BQ99941 703 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 C17orf62Q9BQA9 187 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 KCNE3Q9Y6H6 103 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 TMEM129A0AVI4 362 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 CPSF4LA6NMK7 179 aaKnown RBP12.43□□□□□ -0.42
CLN3-210ENST00000563874 SPINT1O43278 529 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 OR1F1O43749 312 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 RB1P06400 928 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 C8orf89P0DMQ9 161 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 HLA-DMAP28067 261 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 GZMKP49863 264 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 PPP3R1P63098 170 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 MESP2Q0VG99 397 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 COL19A1Q14993 1142 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ZFAND1Q8TCF1 268 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 RAD51AP1Q96B01 352 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ARHGAP9Q9BRR9 750 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 ZNF304Q9HCX3 659 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 SAGE1Q9NXZ1 904 aa12.43□□□□□ -0.42
CLN3-210ENST00000563874 A0A1W2PS29 197 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 FAM170BA6NMN3 283 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 LZTS3O60299 673 aaPredicted RBP12.42□□□□□ -0.42
CLN3-210ENST00000563874 PRKAR1AP10644 381 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 ERP29P30040 261 aaKnown RBP12.42□□□□□ -0.42
CLN3-210ENST00000563874 SLC1A3P43003 542 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 NCBP2P52298 156 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLN3-210ENST00000563874 CDH11P55287 796 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 BBS1Q8NFJ9 593 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 GIMAP1Q8WWP7 306 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 TFGQ92734 400 aaPredicted RBP12.42□□□□□ -0.42
CLN3-210ENST00000563874 NUS1Q96E22 293 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 C16orf58Q96GQ5 468 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 COQ10AQ96MF6 247 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 MED18Q9BUE0 208 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 EQTNQ9NQ60 294 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 TDP1Q9NUW8 608 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 DKK3Q9UBP4 350 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 SLC23A2Q9UGH3 650 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 NTNG1Q9Y2I2 539 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 GPR55Q9Y2T6 319 aaPredicted RBP12.42□□□□□ -0.42
CLN3-210ENST00000563874 HSPB11Q9Y547 144 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 TSPAN11A1L157 253 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 TSC22D2O75157 780 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 GNSP15586 552 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 EVI2BP34910 448 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 ATP6V1E1P36543 226 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 TAS2R41P59536 307 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 FUT5Q11128 374 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 NDUFAF5Q5TEU4 345 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 LCTLQ6UWM7 567 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 UBE3DQ7Z6J8 389 aa12.42□□□□□ -0.42
CLN3-210ENST00000563874 NUDT13Q86X67 352 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms