RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 LGALS8O00214 317 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 ATG13O75143 517 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 RGS11O94810 467 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 GALTP07902 379 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 PRKAR2AP13861 404 aaKnown RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 ILKQ13418 452 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 GPR68Q15743 365 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 MLIPQ5VWP3 458 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 RASSF6Q6ZTQ3 369 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 MSANTD1Q6ZTZ1 278 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 TOMM5Q8N4H5 51 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 RASGEF1AQ8N9B8 481 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 OR13C5Q8NGS8 318 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 BHLHE41Q9C0J9 482 aaPredicted RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 CHST8Q9H2A9 424 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 FLVCR2Q9UPI3 526 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 TET1Q8NFU7 2136 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 J3QLW9 94 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 GNB5O14775 395 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ZNF19P17023 458 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ATP12AP54707 1039 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 TMEM115Q12893 351 aaPredicted RBP10.69□□□□□ -0.7
LDLR-208ENST00000558518 SNTA1Q13424 505 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 MRPL58Q14197 206 aaKnown RBP10.69□□□□□ -0.7
LDLR-208ENST00000558518 CDONQ4KMG0 1287 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 SLC27A4Q6P1M0 643 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 COMTD1Q86VU5 262 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ZNF433Q8N7K0 673 aaPredicted RBP10.69□□□□□ -0.7
LDLR-208ENST00000558518 CYB561A3Q8NBI2 242 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 GALNT6Q8NCL4 622 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 BTN2A2Q8WVV5 523 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 GAL3ST1Q99999 423 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 TMEM43Q9BTV4 400 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 CACNG6Q9BXT2 260 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 GSDMCQ9BYG8 508 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 SLC25A19Q9HC21 320 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 TAS2R7Q9NYW3 318 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ADAM30Q9UKF2 790 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 GBF1Q92538 1859 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 TRBV5-4A0A0C4DH59 114 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 B8ZZF3 427 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 LATO43561 262 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 KDM4BO94953 1096 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ALDH1A1P00352 501 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 HLA-DPB1P04440 258 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 AKR1D1P51857 326 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 EPHA5P54756 1037 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 TSPAN5P62079 268 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 GRIN2CQ14957 1233 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 MEDAGQ5VYS4 303 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 BICRALQ6AI39 1079 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 CCSAPQ6IQ19 270 aaPredicted RBP10.69□□□□□ -0.7
LDLR-208ENST00000558518 PLBD1Q6P4A8 553 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 C22orf39Q6P5X5 142 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 FAM92BQ6ZTR7 304 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 GRAMD2AQ8IUY3 354 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 CPOQ8IVL8 374 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 CCDC116Q8IYX3 515 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 MS4A3Q96HJ5 214 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 C17orf62Q9BQA9 187 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 DMRT3Q9NQL9 472 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 TEX10Q9NXF1 929 aaPredicted RBP10.69□□□□□ -0.7
LDLR-208ENST00000558518 KLHL21Q9UJP4 597 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 PSMD9O00233 223 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 FAAHO00519 579 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 LEFTY1O75610 366 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 EIF4EP06730 217 aaKnown RBP10.69□□□□□ -0.7
LDLR-208ENST00000558518 ELFN1P0C7U0 828 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 PKLRP30613 574 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 EVX1P49640 407 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ZBTB37Q5TC79 503 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 FAAP20Q6NZ36 180 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 GDPGP1Q6ZNW5 385 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 SLCO4C1Q6ZQN7 724 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 CREB3L2Q70SY1 520 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 GLRX5Q86SX6 157 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 TCTE3Q8IZS6 198 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 CLDN22Q8N7P3 220 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ZBTB44Q8NCP5 570 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ST8SIA2Q92186 375 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ZG16BQ96DA0 208 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 ECHDC3Q96DC8 303 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 NARS2Q96I59 477 aaKnown RBP10.69□□□□□ -0.7
LDLR-208ENST00000558518 ATF6BQ99941 703 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 KLF16Q9BXK1 252 aaPredicted RBP10.69□□□□□ -0.7
LDLR-208ENST00000558518 HCN3Q9P1Z3 774 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 SRRDQ9UH36 339 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 SLC25A13Q9UJS0 675 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 SCML1Q9UN30 329 aa10.69□□□□□ -0.7
LDLR-208ENST00000558518 FNDC1Q4ZHG4 1894 aaPredicted RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 GFYI3L273 518 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 INPPL1O15357 1258 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 OR1F1O43749 312 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 PLATP00750 562 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 ANXA3P12429 323 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 HMGA1P17096 107 aaKnown RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 HLA-DMAP28067 261 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 NCBP2P52298 156 aaKnown RBP eCLIP10.68□□□□□ -0.7
LDLR-208ENST00000558518 EXOSC2Q13868 293 aaKnown RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 USP50Q70EL3 339 aaPredicted RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms