RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 VEGFDO43915 354 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 IGHA1P01876 353 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 CTSLP07711 333 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 LAG3P18627 525 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 M6PRP20645 277 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 DDX6P26196 483 aaKnown RBP eCLIP15.33■□□□□ 0.043e-6■□□□□ 9.6
SHMT2-231ENST00000557433 STAT5AP42229 794 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 OR3A3P47888 321 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 CCR8P51685 355 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 CDH11P55287 796 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 REEP5Q00765 189 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 BTBD16Q32M84 506 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 FAM209AQ5JX71 171 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 SIGIRRQ6IA17 410 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 PAMR1Q6UXH9 720 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 KIF18BQ86Y91 864 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 MARCH9Q86YJ5 346 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 GHDCQ8N2G8 530 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 XAGE5Q8WWM1 108 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 EXOSC8Q96B26 276 aaKnown RBP15.33■□□□□ 0.04
SHMT2-231ENST00000557433 UPRTQ96BW1 309 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 NLKQ9UBE8 527 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 SRRDQ9UH36 339 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 SATB2Q9UPW6 733 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 A0A1W2PRU2 124 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 GABRPO00591 440 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 TEX28O15482 410 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 POP7O75817 140 aaKnown RBP15.32■□□□□ 0.04
SHMT2-231ENST00000557433 TBX6O95947 436 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-231ENST00000557433 TYRP14679 529 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 SLC6A11P48066 632 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 MTNR1BP49286 362 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 ARFIP1P53367 373 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 GET4Q7L5D6 327 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-231ENST00000557433 TOR1AIP2Q8NFQ8 470 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 OR6T1Q8NGN1 323 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 SUN5Q8TC36 379 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 RAET1EQ8TD07 263 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 PXYLP1Q8TE99 480 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 F2RL3Q96RI0 385 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 GPA33Q99795 319 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 WFDC6Q9BQY6 131 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 FAIM2Q9BWQ8 316 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 OR2AG1Q9H205 316 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 RERGLQ9H628 205 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 DDX31Q9H8H2 851 aaKnown RBP15.32■□□□□ 0.04
SHMT2-231ENST00000557433 B3GAT2Q9NPZ5 323 aa15.32■□□□□ 0.04
SHMT2-231ENST00000557433 A0A0G2JMP0 313 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 PRAMEF27A3QJZ7 478 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 WASHC1A8K0Z3 465 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 NOS1APO75052 506 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-231ENST00000557433 CD53P19397 219 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 NTSP30990 170 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 RNF144AP50876 292 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-231ENST00000557433 DPTQ07507 201 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 IKZF1Q13422 519 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 AADACL4Q5VUY2 407 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 CCDC28AQ8IWP9 274 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 UBE2J2Q8N2K1 259 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 PIGXQ8TBF5 258 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 PLA2G12AQ9BZM1 189 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 PIGUQ9H490 435 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 SPHK2Q9NRA0 654 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 TRPC4Q9UBN4 977 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 ASF1AQ9Y294 204 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 CLCA3PQ9Y6N3 262 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 NUP210Q8TEM1 1887 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-231ENST00000557433 A0A087WUU8 490 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 FAM170BA6NMN3 283 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 NDUFS4O43181 175 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 PAPLNO95428 1278 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 FGF19O95750 216 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 SYN1P17600 705 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 HTR1FP30939 366 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 ST3GAL3Q11203 375 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 P2RY14Q15391 338 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 HSD17B12Q53GQ0 312 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 ESCO2Q56NI9 601 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 LRRC28Q86X40 367 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-231ENST00000557433 AMDHD1Q96NU7 426 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 OR52A5Q9H2C5 316 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 C11orf49Q9H6J7 331 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 ZCCHC3Q9NUD5 404 aaKnown RBP15.31■□□□□ 0.04
SHMT2-231ENST00000557433 MCUBQ9NWR8 336 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 CALML5Q9NZT1 146 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 KLF15Q9UIH9 416 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 SLC13A4Q9UKG4 626 aa15.31■□□□□ 0.04
SHMT2-231ENST00000557433 TET1Q8NFU7 2136 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 LILRB3O75022 631 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 HMGN1P05114 100 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 FPR3P25089 353 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 SLC6A1P30531 599 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 TALDO1P37837 337 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 GPR1P46091 355 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 TAS2R41P59536 307 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 SHC2P98077 582 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 SP3Q02447 781 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 ZNF155Q12901 538 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-231ENST00000557433 GPR162Q16538 588 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.3■□□□□ 0.044e-7■□□□□ 9.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms