RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 AQP5P55064 265 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 NME5P56597 212 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 CORO7P57737 925 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 PLCXD2Q0VAA5 305 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 NTRK2Q16620 822 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 DPY19L1Q2PZI1 675 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 SLC22A10Q63ZE4 541 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 OR4F3Q6IEY1 312 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 SZRD1Q7Z422 152 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 SULF2Q8IWU5 870 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 PRR22Q8IZ63 422 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 SLC34A3Q8N130 599 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 POGLUT1Q8NBL1 392 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 GALNT11Q8NCW6 608 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 OR10G3Q8NGC4 313 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 OR8J2Q8NGG1 315 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 PAQR8Q8TEZ7 354 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 TESCQ96BS2 214 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 ZBTB18Q99592 522 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 C3orf14Q9HBI5 128 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 NEUROD4Q9HD90 331 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 TCF7L2Q9NQB0 619 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 VPS4AQ9UN37 437 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 GPR45Q9Y5Y3 372 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 E9PBE3 544 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 G3V3Y1 287 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 CFLARO15519 480 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 EMC8O43402 210 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 EDF1O60869 148 aaKnown RBP12.51□□□□□ -0.41
SHMT2-228ENST00000557302 PPM1BO75688 479 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 CT45A8P0DMV1 189 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 CT45A9P0DMV2 189 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 IDH3AP50213 366 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 PRKAG1P54619 331 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 FBXW4P57775 412 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 GPR85P60893 370 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 UFM1P61960 85 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 RPP38P78345 283 aaKnown RBP12.51□□□□□ -0.41
SHMT2-228ENST00000557302 PRR5P85299 388 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 ZNHIT3Q15649 155 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-228ENST00000557302 GSTA3Q16772 222 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 PDCD4Q53EL6 469 aaKnown RBP12.51□□□□□ -0.41
SHMT2-228ENST00000557302 CT45A2Q5DJT8 189 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 ANXA8L1Q5VT79 327 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 TMEM198Q66K66 360 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 NPSR1Q6W5P4 371 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 SLC44A2Q8IWA5 706 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-228ENST00000557302 FBXW8Q8N3Y1 598 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 CPSF7Q8N684 471 aaKnown RBP12.51□□□□□ -0.41
SHMT2-228ENST00000557302 VPS37AQ8NEZ2 397 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 NUP43Q8NFH3 380 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 OR5M3Q8NGP4 307 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 NR4A3Q92570 626 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 OMA1Q96E52 524 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 MARK4Q96L34 752 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 FRMD6Q96NE9 622 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 MS4A4EQ96PG1 132 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 SLX1AQ9BQ83 275 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 CLMPQ9H6B4 373 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 SH2D2AQ9NP31 389 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 EQTNQ9NQ60 294 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 DEPPQ9NTK1 212 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 CNIH4Q9P003 139 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 NTMQ9P121 344 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 OR10H1Q9Y4A9 318 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 SNX8Q9Y5X2 465 aa12.51□□□□□ -0.41
SHMT2-228ENST00000557302 UBR5O95071 2799 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-228ENST00000557302 COL12A1Q99715 3063 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 TTC36A6NLP5 189 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 RNASET2O00584 256 aaKnown RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 ABCB1P08183 1280 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 ZNF24P17028 368 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 CNR1P21554 472 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 S100A3P33764 101 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 KRT20P35900 424 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 PSG6Q00889 435 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 ALDH6A1Q02252 535 aaKnown RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 FAM174BQ3ZCQ3 159 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 SPDYE7PQ495Y7 208 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 VPS26BQ4G0F5 336 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 SPANXN4Q5MJ08 99 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 ZNF324BQ6AW86 544 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 GK5Q6ZS86 529 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 ZFP62Q8NB50 900 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 GLB1L3Q8NCI6 653 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 OR56A1Q8NGH5 318 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 PSMA8Q8TAA3 256 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 DIO2Q92813 273 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 TMBIM1Q969X1 311 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 MOAP1Q96BY2 351 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 FAM120BQ96EK7 910 aaKnown RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 TEX37Q96LM6 180 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 SECISBP2Q96T21 854 aaKnown RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 FAM173AQ9BQD7 235 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 EBF4Q9BQW3 602 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 LMF2Q9BU23 707 aaKnown RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 CCDC28BQ9BUN5 200 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 Q9N2J8 555 aa12.5□□□□□ -0.41
SHMT2-228ENST00000557302 SIRT3Q9NTG7 399 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-228ENST00000557302 ZCCHC3Q9NUD5 404 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms