RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 DCAF7P61962 342 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 BST1Q10588 318 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 ZNF155Q12901 538 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-219ENST00000555563 STX3Q13277 289 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 PTGR1Q14914 329 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 HYAL4Q2M3T9 481 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 C6orf136Q5SQH8 315 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 NPSR1Q6W5P4 371 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 Q6ZPB1 254 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-219ENST00000555563 RGS9BPQ6ZS82 235 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 ZNF551Q7Z340 670 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-219ENST00000555563 SPPL2CQ8IUH8 684 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 OR2L13Q8N349 312 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 FAM109AQ8N4B1 249 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 DIO2Q92813 273 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 DOHHQ9BU89 302 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 DEFB127Q9H1M4 99 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 ZNF703Q9H7S9 590 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-219ENST00000555563 FOLH1BQ9HBA9 442 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 PLSCR2Q9NRY7 297 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 DDX18Q9NVP1 670 aaKnown RBP12.6□□□□□ -0.39
SHMT2-219ENST00000555563 TAS2R9Q9NYW1 312 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 HAO1Q9UJM8 370 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 BOKQ9UMX3 212 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-219ENST00000555563 LIPGQ9Y5X9 500 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 A1L4Q6 167 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 UPK1AO00322 258 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 PLOD2O00469 737 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 CCL21O00585 134 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 SCAMP2O15127 329 aaKnown RBP12.59□□□□□ -0.39
SHMT2-219ENST00000555563 ZG16O60844 167 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 UGT2B11O75310 529 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 SNUPNO95149 360 aaKnown RBP12.59□□□□□ -0.39
SHMT2-219ENST00000555563 PSMG1O95456 288 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 CELA3AP09093 270 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 CT45A8P0DMV1 189 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 CT45A9P0DMV2 189 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 NAGAP17050 411 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 RPL14P50914 215 aaKnown RBP12.59□□□□□ -0.39
SHMT2-219ENST00000555563 SLC18A1P54219 525 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 CASP6P55212 293 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 CT45A2Q5DJT8 189 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 TBCELQ5QJ74 424 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 IL23RQ5VWK5 629 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 DESI1Q6ICB0 168 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 SLC34A3Q8N130 599 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 HGDQ93099 445 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 TMBIM1Q969X1 311 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 ELP4Q96EB1 424 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 ZNF597Q96LX8 424 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 JSRP1Q96MG2 331 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-219ENST00000555563 RILPQ96NA2 401 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 SECISBP2Q96T21 854 aaKnown RBP12.59□□□□□ -0.39
SHMT2-219ENST00000555563 ZFP64Q9NPA5 681 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 NKIRAS1Q9NYS0 192 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 SH3BP4Q9P0V3 963 aa12.59□□□□□ -0.39
SHMT2-219ENST00000555563 C19orf53Q9UNZ5 99 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-219ENST00000555563 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-219ENST00000555563 LRRK2Q5S007 2527 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 ANKRD33BA6NCL7 494 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 TRIM3O75382 744 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-219ENST00000555563 IFI6P09912 130 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 RFPL3SP0C7P2 107 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 PRPS2P11908 318 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 EFNA1P20827 205 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-219ENST00000555563 PTGS2P35354 604 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 CASP3P42574 277 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 FRKP42685 505 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-219ENST00000555563 CDK9P50750 372 aaKnown RBP12.58□□□□□ -0.4
SHMT2-219ENST00000555563 RPP38P78345 283 aaKnown RBP12.58□□□□□ -0.4
SHMT2-219ENST00000555563 PSG6Q00889 435 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 AGBL2Q5U5Z8 902 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 ARHGAP11AQ6P4F7 1023 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 R3HCC1LQ7Z5L2 792 aaKnown RBP12.58□□□□□ -0.4
SHMT2-219ENST00000555563 WDR53Q7Z5U6 358 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-219ENST00000555563 SLC44A2Q8IWA5 706 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-219ENST00000555563 KIRREL3Q8IZU9 778 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 OR7A2PQ8NGA2 310 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 ZFP28Q8NHY6 868 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 ARL8AQ96BM9 186 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 MTERF3Q96E29 417 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 ZBED6CLQ96FA7 236 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-219ENST00000555563 CCDC120Q96HB5 630 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 NODALQ96S42 347 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 ANGPTL4Q9BY76 406 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 METTL7AQ9H8H3 244 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 ATP6V1HQ9UI12 483 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 NCKAP5O14513 1909 aa12.58□□□□□ -0.4
SHMT2-219ENST00000555563 PRRC2CQ9Y520 2896 aaKnown RBP12.57□□□□□ -0.4
SHMT2-219ENST00000555563 CLDN1O95832 211 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 IGHG3P01860 377 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 TPOP07202 933 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 G6PDP11413 515 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 H2AFXP16104 143 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-219ENST00000555563 GPC1P35052 558 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 RPL3P39023 403 aaKnown RBP12.57□□□□□ -0.4
SHMT2-219ENST00000555563 MASP1P48740 699 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 EMX2Q04743 252 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 MAD2L1Q13257 205 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-219ENST00000555563 FNDC7Q5VTL7 733 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms