RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 M0R082 166 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 PEX12O00623 359 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 TFECO14948 347 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-215ENST00000552823 PRKYO43930 277 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 NR2F6P10588 404 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 C7P10643 843 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 BMP4P12644 408 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 GNSP15586 552 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 RHCEP18577 417 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 PCMT1P22061 227 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 MMP11P24347 488 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 SSTR4P31391 388 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 GABRA3P34903 492 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 MPIP34949 423 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 XCR1P46094 333 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 GSTM5P46439 218 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 SLC9A3P48764 834 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 SRP54P61011 504 aaKnown RBP5.26□□□□□ -1.57
LIMA1-215ENST00000552823 ARF3P61204 181 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-215ENST00000552823 RGS1Q08116 209 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 ALG11Q2TAA5 492 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 NKAIN2Q5VXU1 208 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 FBXO42Q6P3S6 717 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 USP30Q70CQ3 517 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 SPATC1Q76KD6 591 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF765Q7L2R6 523 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 VN1R4Q7Z5H5 301 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 NRMQ8IXM6 262 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 TMEM52Q8NDY8 209 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 OR7G2Q8NG99 324 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 OR4F15Q8NGB8 312 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 CREB3L4Q8TEY5 395 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 FAM3CQ92520 227 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 MYDGFQ969H8 173 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 BORCS5Q969J3 196 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 RERGQ96A58 199 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-215ENST00000552823 FKBP10Q96AY3 582 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 MGLLQ99685 303 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 C1QTNF7Q9BXJ2 289 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 YTHDF1Q9BYJ9 559 aaKnown RBP5.26□□□□□ -1.57
LIMA1-215ENST00000552823 CHST8Q9H2A9 424 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 LRRN3Q9H3W5 708 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 EPHX3Q9H6B9 360 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 CACYBPQ9HB71 228 aaKnown RBP5.26□□□□□ -1.57
LIMA1-215ENST00000552823 PRDM7Q9NQW5 492 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 C8orf4Q9NR00 106 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 POFUT2Q9Y2G5 429 aa5.26□□□□□ -1.57
LIMA1-215ENST00000552823 SPIN1Q9Y657 262 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-215ENST00000552823 OBSL1O75147 1896 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 SVILO95425 2214 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 CACNA1HO95180 2353 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 GXYLT2A0PJZ3 443 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 CDC14CA4D256 554 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 CLCA1A8K7I4 914 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 A8MV72 311 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-215ENST00000552823 FAM171A2A8MVW0 826 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 C2CD4DB7Z1M9 353 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 CLDN25C9JDP6 229 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 C5orf67F2Z3F1 127 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 AP3D1O14617 1153 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 SEMA4FO95754 770 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 RECKO95980 971 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 ALPPP05187 535 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 THEGLP0DJG4 465 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 ITGAMP11215 1152 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 UGT2B7P16662 529 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 ELAVL4P26378 380 aaKnown RBP5.25□□□□□ -1.57
LIMA1-215ENST00000552823 PKLRP30613 574 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 TRIM23P36406 574 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 CD79BP40259 229 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 TMBIM6P55061 237 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 AGERQ15109 404 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF791Q3KP31 576 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-215ENST00000552823 MINDY4Q4G0A6 757 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 SLC22A16Q86VW1 577 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 DNAJC22Q8N4W6 341 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 C10orf53Q8N6V4 93 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 Q8N9G6 341 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-215ENST00000552823 SYT14Q8NB59 555 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 FAM83FQ8NEG4 500 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-215ENST00000552823 OR2L5Q8NG80 312 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 OR4N2Q8NGD1 307 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 RHOXF1Q8NHV9 184 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 ADAMTS16Q8TE57 1224 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 NEURL3Q96EH8 262 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 SLC35A4Q96G79 324 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 SH3YL1Q96HL8 342 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-215ENST00000552823 HRASLS5Q96KN8 279 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 LINC00615Q96LM1 132 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-215ENST00000552823 PTCHD1Q96NR3 888 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF347Q96SE7 839 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 TM9SF2Q99805 663 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 ITPAQ9BY32 194 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 DUSP21Q9H596 190 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 C3orf14Q9HBI5 128 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 FAM60AQ9NP50 221 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 ATP13A2Q9NQ11 1180 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 SEMA4GQ9NTN9 838 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 TMEM45AQ9NWC5 275 aa5.25□□□□□ -1.57
LIMA1-215ENST00000552823 ACTR10Q9NZ32 417 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms