RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 A0A0A6YYD5 115 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 IQCMA0A1B0GVH7 501 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 SHISA3A0PJX4 238 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 LRIT2A6NDA9 550 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 FABP12A6NFH5 140 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 CPSF4LA6NMK7 179 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 GALR2O43603 387 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 NARSO43776 548 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 VEGFDO43915 354 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 TBX19O60806 448 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 TMCC2O75069 709 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 TSPAN19P0C672 248 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ACP5P13686 325 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 NDUFV2P19404 249 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 APEX1P27695 318 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 WASP42768 502 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 WNT4P56705 351 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 SNRPNP63162 240 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 GAB4Q2WGN9 574 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 FAM46CQ5VWP2 391 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 METRNLQ641Q3 311 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 TYW3Q6IPR3 259 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 C1orf94Q6P1W5 598 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 B3GLCTQ6Y288 498 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 GDPGP1Q6ZNW5 385 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 FAM92BQ6ZTR7 304 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ERN2Q76MJ5 926 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF765Q7L2R6 523 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 TRIM69Q86WT6 500 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 TRIM48Q8IWZ4 208 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ETFBKMTQ8IXQ9 262 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 C12orf76Q8N812 135 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 NLGN4YQ8NFZ3 816 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 OR4F15Q8NGB8 312 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 SUN3Q8TAQ9 357 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 CXorf40AQ8TE69 158 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 WDFY2Q96P53 400 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 FERD3LQ96RJ6 166 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 BBS4Q96RK4 519 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 INSM2Q96T92 566 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 C6orf106Q9H6K1 298 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 PELI2Q9HAT8 420 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 SLC35C2Q9NQQ7 365 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 MBNL1Q9NR56 388 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 SEMA4GQ9NTN9 838 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ZSCAN32Q9NX65 697 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 COMMD3Q9UBI1 195 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 NUFIP1Q9UHK0 495 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 MRPS23Q9Y3D9 190 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 CHST2Q9Y4C5 530 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ATG4BQ9Y4P1 393 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 PRUNE2Q8WUY3 3088 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 A0A1W2PR48 441 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 SLC35F4A4IF30 521 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 OR52A4PA6NMU1 304 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 PLA2G10O15496 165 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ERI3O43414 337 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 LGI1O95970 557 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 RB1P06400 928 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 LIMS3P0CW19 117 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 LIMS4P0CW20 117 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 TRHRP34981 398 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 BCL6P41182 706 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 IL12RB1P42701 662 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 KIR2DL3P43628 341 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 RAB8AP61006 207 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ALDH6A1Q02252 535 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 CHRNEQ04844 493 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ELAVL3Q14576 367 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 P2RY14Q15391 338 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 WSCD2Q2TBF2 565 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ZFP69Q49AA0 526 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 SLC30A6Q6NXT4 461 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 TMEM92Q6UXU6 159 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 LRRTM4Q86VH4 590 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 LAPTM4BQ86VI4 370 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 SIMC1Q8NDZ2 872 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 TMIEQ8NEW7 156 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ATP6V1C2Q8NEY4 427 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 OR2A1Q8NGT9 310 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 PRR7Q8TB68 274 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ZFPM2Q8WW38 1151 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 OTUB2Q96DC9 234 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 PPP1R16AQ96I34 528 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 MSLNLQ96KJ4 702 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 PRRC1Q96M27 445 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 C12orf66Q96MD2 445 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 PRRG3Q9BZD7 231 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 DDX31Q9H8H2 851 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 MOV10Q9HCE1 1003 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 RANGRFQ9HD47 186 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 ACSS1Q9NUB1 689 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 IMP3Q9NV31 184 aaKnown RBP7.05□□□□□ -1.28
LIMA1-213ENST00000552720 KCNK6Q9Y257 313 aa7.05□□□□□ -1.28
LIMA1-213ENST00000552720 EDDM13A0A1B0GTR0 161 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PRR23AA6NEV1 266 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 FAM170BA6NMN3 283 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 B4DXG7 233 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 MAN2B1O00754 1011 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms