RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 NMRK1Q9NWW6 199 aa11.69□□□□□ -0.54
PTCH1-221ENST00000550914 KLRF1Q9NZS2 232 aa11.69□□□□□ -0.54
PTCH1-221ENST00000550914 BCAP29Q9UHQ4 241 aa11.69□□□□□ -0.54
PTCH1-221ENST00000550914 MRPS18CQ9Y3D5 142 aaKnown RBP11.69□□□□□ -0.54
PTCH1-221ENST00000550914 CSPG4Q6UVK1 2322 aa11.69□□□□□ -0.54
PTCH1-221ENST00000550914 SH3D21A4FU49 640 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 FRG2CA6NGY1 282 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 H0Y3Z8 333 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 SMIM24O75264 130 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 UGT2B11O75310 529 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 ERAL1O75616 437 aaKnown RBP11.68□□□□□ -0.54
PTCH1-221ENST00000550914 BCAS2O75934 225 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-221ENST00000550914 COL6A2P12110 1019 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 CD53P19397 219 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 SRD5A2P31213 254 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 PHBP35232 272 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 SOX18P35713 384 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 FEN1P39748 380 aaKnown RBP11.68□□□□□ -0.54
PTCH1-221ENST00000550914 MAGEA12P43365 314 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 CPA2P48052 419 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 EMDP50402 254 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 DIO3P55073 304 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 GALNT1Q10472 559 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-221ENST00000550914 FOXF2Q12947 444 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 EXOSC7Q15024 291 aaKnown RBP11.68□□□□□ -0.54
PTCH1-221ENST00000550914 TRADDQ15628 312 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 NNATQ16517 81 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 TSNAXIP1Q2TAA8 658 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 SHEQ5VZ18 495 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 AAGABQ6PD74 315 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 FAM111BQ6SJ93 734 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 MILR1Q7Z6M3 343 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 IFNEQ86WN2 208 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 PLCZ1Q86YW0 608 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 TRIM42Q8IWZ5 723 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 WFDC11Q8NEX6 87 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 ZNF675Q8TD23 568 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 TMCO6Q96DC7 493 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 PHF21BQ96EK2 531 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 COL21A1Q96P44 957 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 G6PC3Q9BUM1 346 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 FAIM2Q9BWQ8 316 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 VPS11Q9H270 941 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 ACSS3Q9H6R3 686 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 GALNT8Q9NY28 637 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 CLCF1Q9UBD9 225 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 NDRG3Q9UGV2 375 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 SLC12A4Q9UP95 1085 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 MAPRE3Q9UPY8 281 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 GPR55Q9Y2T6 319 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-221ENST00000550914 PLLPQ9Y342 182 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 DSCAMO60469 2012 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 HIVEP2P31629 2446 aa11.68□□□□□ -0.54
PTCH1-221ENST00000550914 A8MXE2 369 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 OTCP00480 354 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 CRHP06850 196 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 RPS17P08708 135 aaKnown RBP11.67□□□□□ -0.54
PTCH1-221ENST00000550914 CNTFP26441 200 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 LHX2P50458 406 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 HMGCS1Q01581 520 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 UAP1Q16222 522 aaPredicted RBP11.67□□□□□ -0.54
PTCH1-221ENST00000550914 BCL2A1Q16548 175 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 TRMT12Q53H54 448 aaKnown RBP11.67□□□□□ -0.54
PTCH1-221ENST00000550914 DESI1Q6ICB0 168 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 ZNF572Q7Z3I7 529 aaPredicted RBP11.67□□□□□ -0.54
PTCH1-221ENST00000550914 SAMD14Q8IZD0 417 aaPredicted RBP11.67□□□□□ -0.54
PTCH1-221ENST00000550914 PLD6Q8N2A8 252 aaKnown RBP11.67□□□□□ -0.54
PTCH1-221ENST00000550914 OR4F6Q8NGB9 312 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 OR52R1Q8NGF1 315 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 SLC44A1Q8WWI5 657 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 TM4SF18Q96CE8 201 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 KLHL29Q96CT2 875 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 MRRFQ96E11 262 aaKnown RBP11.67□□□□□ -0.54
PTCH1-221ENST00000550914 CNRIP1Q96F85 164 aaPredicted RBP11.67□□□□□ -0.54
PTCH1-221ENST00000550914 SLC35A4Q96G79 324 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 ZNF681Q96N22 645 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 NSUN5Q96P11 429 aaKnown RBP11.67□□□□□ -0.54
PTCH1-221ENST00000550914 BTBD9Q96Q07 612 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 C1QTNF3Q9BXJ4 246 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 FUT8Q9BYC5 575 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 TAS2R10Q9NYW0 307 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 PACSIN3Q9UKS6 424 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 SNX6Q9UNH7 406 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 DLGAP4Q9Y2H0 992 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 WIF1Q9Y5W5 379 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 ZNF780BQ9Y6R6 833 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 HEATR5AQ86XA9 2040 aa11.67□□□□□ -0.54
PTCH1-221ENST00000550914 ATRQ13535 2644 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 PCNX3Q9H6A9 2034 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 C2orf72A6NCS6 295 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 FAM171A2A8MVW0 826 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 PLOD2O00469 737 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 MSTNO14793 375 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 CASKO14936 926 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 ARHGEF9O43307 516 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 HCRTR2O43614 444 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 PDYNP01213 254 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 INHBBP09529 407 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 HSD3B1P14060 373 aa11.66□□□□□ -0.54
PTCH1-221ENST00000550914 ZNF708P17019 499 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms