RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TMEM43Q9BTV4 400 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 TEX12Q9BXU0 123 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 PLSCR3Q9NRY6 295 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ING3Q9NXR8 418 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 NINQ8N4C6 2090 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 LINC00854A0A1B0GVQ3 168 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ABHD14A-ACY1A0A1B0GW23 586 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 NOTOA8MTQ0 251 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 CASKO14936 926 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 SPINT1O43278 529 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 LYRM1O43325 122 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ORC5O43913 435 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 NTSP30990 170 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 SLC1A3P43003 542 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 GPR1P46091 355 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ARPC4P59998 168 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 FOXD4Q12950 439 aaPredicted RBP12.93□□□□□ -0.34
VPS33A-208ENST00000543633 GRIN2CQ14957 1233 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 SNAP47Q5SQN1 464 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 OR2G6Q5TZ20 316 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ZNF767PQ75MW2 155 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 KIF18BQ86Y91 864 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ANKRD53Q8N9V6 530 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 CYB5D2Q8WUJ1 264 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 TMEM203Q969S6 136 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 EXOSC8Q96B26 276 aaKnown RBP12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ZFYVE19Q96K21 471 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ATF6BQ99941 703 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 WFDC6Q9BQY6 131 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 LHX9Q9NQ69 397 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 GIMAP4Q9NUV9 329 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 PRKAG2Q9UGJ0 569 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ASF1AQ9Y294 204 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 EXOGQ9Y2C4 368 aaKnown RBP12.93□□□□□ -0.34
VPS33A-208ENST00000543633 ALG5Q9Y673 324 aa12.93□□□□□ -0.34
VPS33A-208ENST00000543633 COL4A3Q01955 1670 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 IGHA1P01876 353 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 MAN2A2P49641 1150 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 BTG1P62324 171 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 HOXC5Q00444 222 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 CD83Q01151 205 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 TRAM2Q15035 370 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 ZNF77Q15935 545 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 LY6G5CQ5SRR4 150 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 RAET1GQ6H3X3 334 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 COMTD1Q86VU5 262 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 SYT14Q8NB59 555 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 OR6T1Q8NGN1 323 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 AMDHD1Q96NU7 426 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 UBL7Q96S82 380 aaPredicted RBP12.92□□□□□ -0.34
VPS33A-208ENST00000543633 FAIM2Q9BWQ8 316 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 SAP130Q9H0E3 1048 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 TDP1Q9NUW8 608 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 MRPL39Q9NYK5 338 aaKnown RBP12.92□□□□□ -0.34
VPS33A-208ENST00000543633 ITM2BQ9Y287 266 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 CARD8Q9Y2G2 431 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 BOLA1Q9Y3E2 137 aa12.92□□□□□ -0.34
VPS33A-208ENST00000543633 A0A0A6YYD5 115 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 OR6C70A6NIJ9 312 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 RTCAO00442 366 aaKnown RBP12.91□□□□□ -0.34
VPS33A-208ENST00000543633 TMPRSS11DO60235 418 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 EFCAB14O75071 495 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 ZNF780AO75290 641 aaPredicted RBP12.91□□□□□ -0.34
VPS33A-208ENST00000543633 CLEC3AO75596 197 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 EPPINO95925 133 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 CHRNB1P11230 501 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 SLC6A11P48066 632 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 NFE2L1Q14494 772 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 ARHGAP15Q53QZ3 475 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 Q5BKY6 102 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 CREB3L2Q70SY1 520 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 TRILQ7L0X0 811 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 C11orf96Q7Z7L8 435 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 KLHL36Q8N4N3 616 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 YIPF7Q8N8F6 280 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 TMEM145Q8NBT3 493 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 TTLQ8NG68 377 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 DNAJA4Q8WW22 397 aaPredicted RBP12.91□□□□□ -0.34
VPS33A-208ENST00000543633 XAGE5Q8WWM1 108 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 GATAD2BQ8WXI9 593 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 SMG7Q92540 1137 aaKnown RBP12.91□□□□□ -0.34
VPS33A-208ENST00000543633 CREB3L1Q96BA8 519 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 IL17FQ96PD4 163 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 GPA33Q99795 319 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 ARHGDIGQ99819 225 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 ABCG4Q9H172 646 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 GLIPR2Q9H4G4 154 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 ZCCHC3Q9NUD5 404 aaKnown RBP12.91□□□□□ -0.34
VPS33A-208ENST00000543633 TOR4AQ9NXH8 423 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 CALML5Q9NZT1 146 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 TRPC4Q9UBN4 977 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 TAC3Q9UHF0 121 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 CBLCQ9ULV8 474 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 CLCA2Q9UQC9 943 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 LIPT1Q9Y234 373 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 YARS2Q9Y2Z4 477 aaKnown RBP12.91□□□□□ -0.34
VPS33A-208ENST00000543633 FAM240BA0A1B0GVZ2 78 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 FAM170BA6NMN3 283 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 CSF2P04141 144 aa12.91□□□□□ -0.34
VPS33A-208ENST00000543633 ADH1AP07327 375 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms