RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 KIF18BQ86Y91 864 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 ZZZ3Q8IYH5 903 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 MMP21Q8N119 569 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 FAM83FQ8NEG4 500 aaPredicted RBP11.98□□□□□ -0.49
RTN3-213ENST00000543552 TNIP2Q8NFZ5 429 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 KIF18AQ8NI77 898 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 FAM222BQ8WU58 562 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 NINJ1Q92982 152 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 HGDQ93099 445 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 L3HYPDHQ96EM0 354 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 COL21A1Q96P44 957 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 BTBD9Q96Q07 612 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 TRIB1Q96RU8 372 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 UGT2B28Q9BY64 529 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 STMN4Q9H169 189 aaPredicted RBP11.98□□□□□ -0.49
RTN3-213ENST00000543552 CALHM2Q9HA72 323 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 DNAJB12Q9NXW2 375 aaKnown RBP11.98□□□□□ -0.49
RTN3-213ENST00000543552 EHD3Q9NZN3 535 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 ZNF225Q9UK10 706 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 DLGAP4Q9Y2H0 992 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 SLC6A5Q9Y345 797 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 C2CD3Q4AC94 2353 aa11.98□□□□□ -0.49
RTN3-213ENST00000543552 MBD3L4A6NDZ8 208 aaPredicted RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 MBD3L3A6NE82 208 aaPredicted RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 MBD3L5A6NJ08 208 aaPredicted RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 RIPK2O43353 540 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 DLX3O60479 287 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 ICOSLGO75144 302 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 UGT2B11O75310 529 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 CTAG2O75638 210 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 SLITRK5O94991 958 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 IL3P08700 152 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 PCSK2P16519 638 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 BMP7P18075 431 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 IL12BP29460 328 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 TIA1P31483 386 aaKnown RBP eCLIP11.97□□□□□ -0.49
RTN3-213ENST00000543552 MPIP34949 423 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 OPRM1P35372 400 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 EMDP50402 254 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 ART1P52961 327 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 LTB4RQ15722 352 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 FLYWCH1Q4VC44 716 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 TRMT12Q53H54 448 aaKnown RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 EIPR1Q53HC9 387 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 UNC50Q53HI1 259 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 ZNF628Q5EBL2 1059 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 WIPI1Q5MNZ9 446 aaPredicted RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 GALNT18Q6P9A2 607 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 AAGABQ6PD74 315 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 SEM1Q6ZVN7 128 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 RELL2Q8NC24 303 aaPredicted RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 OR14L1PQ8NHC6 308 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 MBD3L2Q8NHZ7 208 aaPredicted RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 ZPLD1Q8TCW7 415 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 NTNG2Q96CW9 530 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 RMND5BQ96G75 393 aaPredicted RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 WDYHV1Q96HA8 205 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 ZNF681Q96N22 645 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 ZFP3Q96NJ6 502 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 POLDIP3Q9BY77 421 aaKnown RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 ACPTQ9BZG2 426 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 CLEC4MQ9H2X3 399 aaPredicted RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 ACBD3Q9H3P7 528 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 TMEM216Q9P0N5 145 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 DCDC2Q9UHG0 476 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 MAPRE3Q9UPY8 281 aa11.97□□□□□ -0.49
RTN3-213ENST00000543552 EXO1Q9UQ84 846 aaKnown RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 GPR55Q9Y2T6 319 aaPredicted RBP11.97□□□□□ -0.49
RTN3-213ENST00000543552 EEF1E1-BLOC1S5C9J1V9 151 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 H0Y3Z8 333 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 EEF1E1O43324 174 aaKnown RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 COQ9O75208 318 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 ERN1O75460 977 aaKnown RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 REM1O75628 298 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 IL18BPO95998 194 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 CPN1P15169 458 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 CTSSP25774 331 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 DNAJA1P31689 397 aaKnown RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 NAGLUP54802 743 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 EEF1A1P68104 462 aaKnown RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 MRPS35P82673 323 aaKnown RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 SORDQ00796 357 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 ZNF763Q0D2J5 394 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 IMPG1Q17R60 797 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 SPDYAQ5MJ70 313 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 TCHHL1Q5QJ38 904 aaPredicted RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 EEF1A1P5Q5VTE0 462 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 YRDCQ86U90 279 aaKnown RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 IFNEQ86WN2 208 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 PLCZ1Q86YW0 608 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 CCDC116Q8IYX3 515 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 FAM9CQ8IZT9 166 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 NAXEQ8NCW5 288 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 CHDHQ8NE62 594 aaPredicted RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 GOT1L1Q8NHS2 421 aaPredicted RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 TMBIM1Q969X1 311 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 EXOSC8Q96B26 276 aaKnown RBP11.96□□□□□ -0.49
RTN3-213ENST00000543552 SLC35A4Q96G79 324 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 BBS4Q96RK4 519 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 NODALQ96S42 347 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms