RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	ZBED6CL	Q96FA7	236 aa	Predicted RBP	13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	CITED4	Q96RK1	184 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	SFXN1	Q9H9B4	322 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	SLC35C2	Q9NQQ7	365 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	APOBEC3B	Q9UH17	382 aa	Known RBP	13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	IL20RA	Q9UHF4	553 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	ZAR1L	A6NP61	321 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286		K7EQS6	105 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	AIFM1	O95831	613 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	TRIM23	P36406	574 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	CDC42	P60953	191 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	GPR50	Q13585	617 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	LRRC32	Q14392	662 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	PODNL1	Q6PEZ8	512 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	RTL10	Q7L3V2	364 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	SLC46A3	Q7Z3Q1	461 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	IQCH	Q86VS3	1027 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	ANGPTL6	Q8NI99	470 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	SUN3	Q8TAQ9	357 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	SDHC	Q99643	169 aa	Predicted RBP	13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	SLC17A9	Q9BYT1	436 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	BTBD1	Q9H0C5	482 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	A4GALT	Q9NPC4	353 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	FKBP14	Q9NWM8	211 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	TVP23B	Q9NYZ1	205 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D29	Q9UFV1	150 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	TMCC3	Q9ULS5	477 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	A4GNT	Q9UNA3	340 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	GPR52	Q9Y2T5	361 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	PEX16	Q9Y5Y5	336 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	FAM25A	B3EWG3	89 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	FAM25C	B3EWG5	89 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	FAM25G	B3EWG6	89 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286		H3BQ06	376 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	TLR4	O00206	839 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	H1F0	P07305	194 aa	Known RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	MC3R	P41968	323 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	KCNJ5	P48544	419 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	RGS6	P49758	472 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	HMGA2	P52926	109 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	GPLD1	P80108	840 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	C19orf57	Q0VDD7	668 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	SHH	Q15465	462 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	TBCE	Q15813	527 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	GPAT3	Q53EU6	434 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	PGBD2	Q6P3X8	592 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	SYCE2	Q6PIF2	218 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	ZNF517	Q6ZMY9	492 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	SHF	Q7M4L6	423 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	ZCCHC10	Q8TBK6	192 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	PHOSPHO2	Q8TCD6	241 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	RAB7B	Q96AH8	199 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	MS4A6E	Q96DS6	147 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	SLC6A18	Q96N87	628 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	KCNS3	Q9BQ31	491 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	PHPT1	Q9NRX4	125 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D24	Q9ULP9	559 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	ZNF860	A6NHJ4	632 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	LOC110117498-PIK3R3	F6TDL0	507 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	MRPS14	O60783	128 aa	Known RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	RNGTT	O60942	597 aa	Known RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	RPN2	P04844	631 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	APOD	P05090	189 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	DLX2	Q07687	328 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	ARHGAP19	Q14CB8	494 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	YIF1B	Q5BJH7	314 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	TMEM196	Q5HYL7	178 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	KIAA1161	Q6NSJ0	714 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	VRK2	Q86Y07	508 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	OR8H2	Q8N162	312 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	CYP4Z2P	Q8N1L4	340 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	DEPDC4	Q8N2C3	294 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	MAPKAP1	Q9BPZ7	522 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	PLA2G12A	Q9BZM1	189 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	UCK2	Q9BZX2	261 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	POLR2J3	Q9H1A7	115 aa	Known RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	EGLN3	Q9H6Z9	239 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	DDX31	Q9H8H2	851 aa	Known RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	EXOSC4	Q9NPD3	245 aa	Known RBP	13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	KCND3	Q9UK17	655 aa		13.9	□□□□□ -0.18
DDX55-209	ENST00000542286	MAN2B1	O00754	1011 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	PRKACB	P22694	351 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	FAM214A	Q32MH5	1076 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	ZER1	Q7Z7L7	766 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	SLC34A3	Q8N130	599 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	OR2L3	Q8NG85	312 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	PATE1	Q8WXA2	126 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	TRMT61A	Q96FX7	289 aa	Known RBP	13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	ZNF354B	Q96LW1	612 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	GDF15	Q99988	308 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	NEUROD4	Q9HD90	331 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	PRDM7	Q9NQW5	492 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	GRIP1	Q9Y3R0	1128 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	TLX2	O43763	284 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	PRKY	O43930	277 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	RPLP0	P05388	317 aa	Known RBP	13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	HIST1H1T	P22492	207 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	MMP11	P24347	488 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	PKLR	P30613	574 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	XK	P51811	444 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms