RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 PPP1R2P3Q6NXS1 205 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 PSRC1Q6PGN9 363 aaPredicted RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 DHRS4L2Q6PKH6 230 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 KDM7AQ6ZMT4 941 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 RGS9BPQ6ZS82 235 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 TPGS1Q6ZTW0 290 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 STXBP4Q6ZWJ1 553 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 FRA10AC1Q70Z53 315 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 ANKRD33Q7Z3H0 272 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 HDDC2Q7Z4H3 204 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 CDR2LQ86X02 465 aaPredicted RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 SLC22A9Q8IVM8 553 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 MMD2Q8IY49 270 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 CCDC36Q8IYA8 594 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 SLC38A6Q8IZM9 456 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 LGI2Q8N0V4 545 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 EID3Q8N140 333 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 ZNF843Q8N446 348 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 FBXL16Q8N461 479 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 ALLCQ8N6M5 410 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 MAPKAPK5-AS1Q8N8E1 139 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 FAM133AQ8N9E0 248 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 TMEM178AQ8NBL3 297 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 MINDY2Q8NBR6 621 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 CLEC1AQ8NC01 280 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 ADAD2Q8NCV1 583 aaKnown RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 OR11H4Q8NGC9 324 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 CLHC1Q8NHS4 586 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 OLIG1Q8TAK6 271 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 ADAMTS16Q8TE57 1224 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 AGAP11Q8TF27 550 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 SCFD1Q8WVM8 642 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 ASZ1Q8WWH4 475 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 MYDGFQ969H8 173 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 DGCR14Q96DF8 476 aaKnown RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 RIT2Q99578 217 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 ZNF559Q9BR84 538 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 LLPHQ9BRT6 129 aaKnown RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 CCM2Q9BSQ5 444 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 TRIM62Q9BVG3 475 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 PINK1Q9BXM7 581 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 ZMYND12Q9H0C1 365 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 WDR13Q9H1Z4 485 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 CUEDC2Q9H467 287 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 MARCH7Q9H992 704 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 LIN28AQ9H9Z2 209 aaKnown RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 PLGRKTQ9HBL7 147 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 KCNMB3Q9NPA1 279 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 MRPL40Q9NQ50 206 aaKnown RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 PPANQ9NQ55 473 aaKnown RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 NUDT15Q9NV35 164 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 UBQLN2Q9UHD9 624 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 NOCTQ9UK39 431 aaKnown RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 ANGPTL2Q9UKU9 493 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 PSME2Q9UL46 239 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 AURKCQ9UQB9 309 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 ERVK-19Q9WJR5 959 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 MRPS28Q9Y2Q9 187 aaKnown RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 KLK4Q9Y5K2 254 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 KLF2Q9Y5W3 355 aaPredicted RBP2.87□□□□□ -1.95
USP28-210ENST00000542033 ERCC6Q03468 1493 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 SHANK2Q9UPX8 1470 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 E9PCH4 1651 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 LMTK2Q8IWU2 1503 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 MROH7-TTC4A0A0A0MT08 1334 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 MAP3K15Q6ZN16 1313 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 WDR19Q8NEZ3 1342 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 PCDH11XQ9BZA7 1347 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 SYNMO15061 1565 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 KDM5CP41229 1560 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 NUP155O75694 1391 aa2.87□□□□□ -1.95
USP28-210ENST00000542033 NAIPQ13075 1403 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 FGD6Q6ZV73 1430 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 AQRO60306 1485 aaKnown RBP eCLIP2.86□□□□□ -1.956e-6■■■■□ 25.1
USP28-210ENST00000542033 BCORL1Q5H9F3 1711 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 SUPT6HQ7KZ85 1726 aaKnown RBP2.86□□□□□ -1.95
USP28-210ENST00000542033 IGHV4-4A0A075B6R2 117 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 A0A1B0GTQ1 180 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 FUOMA2VDF0 154 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 CTAGE15A4D2H0 777 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 TCP11X1B4DZS4 312 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 PRSS46E5RG02 174 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 LAD1O00515 517 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 ACOX3O15254 700 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 BUB1O43683 1085 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 NOS1APO75052 506 aaPredicted RBP2.86□□□□□ -1.95
USP28-210ENST00000542033 RBBP9O75884 186 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 AP2A2O94973 939 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 NADKO95544 446 aaPredicted RBP2.86□□□□□ -1.95
USP28-210ENST00000542033 IFNA16P05015 189 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 SP9P0CG40 484 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 FAM157CP0CG43 387 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 IGHV4-31P0DP07 118 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 CLUP10909 449 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 SLC2A3P11169 496 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 GFAPP14136 432 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 ETS1P14921 441 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 ZNF18P17022 549 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 RAB4AP20338 218 aa2.86□□□□□ -1.95
USP28-210ENST00000542033 ELAVL4P26378 380 aaKnown RBP2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms