RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TECTBQ96PL2 329 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 OR7D2Q96RA2 312 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 ZCCHC3Q9NUD5 404 aaKnown RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 C2CD4BA6NLJ0 364 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 E7ESA3 106 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 MATN3O15232 486 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 BRINP1O60477 761 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 C8GP07360 202 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 GABRR2P28476 465 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 PREPP48147 710 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 CSNK2A1P68400 391 aaPredicted RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 ZFAND4Q86XD8 727 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 CSNK2A3Q8NEV1 391 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 EXTL1Q92935 676 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 SLC23A1Q9UHI7 598 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 NDRG2Q9UN36 371 aaKnown RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 V9GYS6 101 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 CASTOR2A6NHX0 329 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 MATN4O95460 622 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 ZNF16P17020 682 aaPredicted RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 MLLT11Q13015 90 aaPredicted RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 TMEM81Q6P7N7 255 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 B3GLCTQ6Y288 498 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 PIM3Q86V86 326 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 OR4D6Q8NGJ1 314 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 FAM46BQ96A09 425 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 HS6ST2Q96MM7 605 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 TM6SF2Q9BZW4 377 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 TINAGL1Q9GZM7 467 aaPredicted RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 ACSS1Q9NUB1 689 aaPredicted RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 MRPL22Q9NWU5 206 aaKnown RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 LIPT1Q9Y234 373 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 LRP5LA4QPB2 252 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 FAM221BA6H8Z2 402 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 BLOC1S5-TXNDC5H3BN57 136 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 H7C4K7 107 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 ENPP3O14638 875 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 HLA-AP01891 365 aaKnown RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 NT5EP21589 574 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 CBLP22681 906 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 MPIP34949 423 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 IGFALSP35858 605 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 DAOAP59103 153 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 RAB1AP62820 205 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 OR2T2Q6IF00 324 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 TMEM68Q96MH6 324 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 TGM7Q96PF1 710 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 RBM14Q96PK6 669 aaKnown RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 FTHL17Q9BXU8 183 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 PORCNQ9H237 461 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 AKIP1Q9NQ31 210 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 KCNQ5Q9NR82 932 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 NDOR1Q9UHB4 597 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 SIX4Q9UIU6 781 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 WIF1Q9Y5W5 379 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 A0A1W2PQ67 120 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 C4BPAP04003 597 aaKnown RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 OR13C7P0DN81 318 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 TAL1P17542 331 aaPredicted RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 C5AR1P21730 350 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 SEC61A1P61619 476 aaKnown RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 SUMO1P63165 101 aaKnown RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 DGKZQ13574 1117 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 LCN10Q6JVE6 187 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 SLC46A3Q7Z3Q1 461 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 DTWD1Q8N5C7 304 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 RAET1EQ8TD07 263 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 TMEM125Q96AQ2 219 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 MEPEQ9NQ76 525 aaPredicted RBP8.35□□□□□ -1.07
YBX3-208ENST00000540447 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 ZNF736B4DX44 427 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 CDK2AP1O14519 115 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 TNFSF12O43508 249 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 PCDH8O95206 1070 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 LIPCP11150 499 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 FABP4P15090 132 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 AKT2P31751 481 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 CASRP41180 1078 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 NCBP2P52298 156 aaKnown RBP eCLIP8.34□□□□□ -1.07
YBX3-208ENST00000540447 EPHA5P54756 1037 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 CAV3P56539 151 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SLC17A1Q14916 467 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 RBMS2Q15434 407 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 UGT3A2Q3SY77 523 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SPIN4Q56A73 249 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 NIPAL3Q6P499 406 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 CNKSR3Q6P9H4 555 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SERPINA12Q8IW75 414 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SLC22A15Q8IZD6 547 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 LILRB2Q8N423 598 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 OR5H2Q8NGV7 314 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SYNPRQ8TBG9 265 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 DUS3LQ96G46 650 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 AK6Q9Y3D8 172 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 ARGFXA6NJG6 315 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SLC22A31A6NKX4 558 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 GAPDHSO14556 408 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 ADAMTS3O15072 1205 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 ATG13O75143 517 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 PAGE1O75459 146 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms