RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CDKN2CP42773 168 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 AVPR1BP47901 424 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 C9orf50Q5SZB4 431 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 ZNF704Q6ZNC4 412 aaPredicted RBP13.21□□□□□ -0.3
LIG1-203ENST00000536218 FTMTQ8N4E7 242 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 TRAM1L1Q8N609 369 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 UCN3Q969E3 161 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 OTUB1Q96FW1 271 aaPredicted RBP13.21□□□□□ -0.3
LIG1-203ENST00000536218 APIPQ96GX9 242 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 ZC3HAV1LQ96H79 300 aaKnown RBP13.21□□□□□ -0.3
LIG1-203ENST00000536218 NIPSNAP1Q9BPW8 284 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 CPPED1Q9BRF8 314 aaPredicted RBP13.21□□□□□ -0.3
LIG1-203ENST00000536218 CDCA4Q9BXL8 241 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 ZCCHC4Q9H5U6 513 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 DNAJC11Q9NVH1 559 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 TXNL4BQ9NX01 149 aaKnown RBP13.21□□□□□ -0.3
LIG1-203ENST00000536218 PLCL2Q9UPR0 1127 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 PRKAB1Q9Y478 270 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 REV3LO60673 3130 aa13.21□□□□□ -0.3
LIG1-203ENST00000536218 ARHGEF33A8MVX0 844 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 NDUFS6O75380 124 aaKnown RBP13.2□□□□□ -0.3
LIG1-203ENST00000536218 APOC1P02654 83 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 FAM157BP0CG42 384 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 HOXA1P49639 335 aaPredicted RBP13.2□□□□□ -0.3
LIG1-203ENST00000536218 SF3A2Q15428 464 aaKnown RBP13.2□□□□□ -0.3
LIG1-203ENST00000536218 IQCCQ4KMZ1 466 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 PLEKHS1Q5SXH7 462 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 MLIPQ5VWP3 458 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 PAQR6Q6TCH4 344 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 TRAPPC5Q8IUR0 188 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 DENND6BQ8NEG7 585 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 UBTD2Q8WUN7 234 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 OR2AG1Q9H205 316 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 CLN6Q9NWW5 311 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 LYARQ9NX58 379 aaKnown RBP13.2□□□□□ -0.3
LIG1-203ENST00000536218 ACTR10Q9NZ32 417 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 MARK1Q9P0L2 795 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 DPP7Q9UHL4 492 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 GLS2Q9UI32 602 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 RPS6KA6Q9UK32 745 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 HYKKA2RU49 373 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 IL6P05231 212 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 KDELR2P33947 212 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 MMP12P39900 470 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 HNMTP50135 292 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 XKR6Q5GH73 641 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 RAET1GQ6H3X3 334 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 RRM2BQ7LG56 351 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 KRT74Q7RTS7 529 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 ZNF551Q7Z340 670 aaPredicted RBP13.2□□□□□ -0.3
LIG1-203ENST00000536218 GPR155Q7Z3F1 870 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 TRIM46Q7Z4K8 759 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 FAM124AQ86V42 546 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 CFAP206Q8IYR0 622 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 FGF13Q92913 245 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 CREB3L1Q96BA8 519 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 PELOQ9BRX2 385 aaKnown RBP13.2□□□□□ -0.3
LIG1-203ENST00000536218 TMEM43Q9BTV4 400 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 EXO1Q9UQ84 846 aaKnown RBP13.2□□□□□ -0.3
LIG1-203ENST00000536218 KRBOX1C9JBD0 128 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 GFYI3L273 518 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 CSO75390 466 aaKnown RBP13.2□□□□□ -0.3
LIG1-203ENST00000536218 S100A3P33764 101 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 KIAA1024LP59773 190 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 ABHD18Q0P651 414 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 CORO6Q6QEF8 472 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 TECPR1Q7Z6L1 1165 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 CALHM3Q86XJ0 350 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 PLPP6Q8IY26 295 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 SAMD14Q8IZD0 417 aaPredicted RBP13.2□□□□□ -0.3
LIG1-203ENST00000536218 VN1R2Q8NFZ6 395 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 OR52P1PQ8NH57 321 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 ARRDC3Q96B67 414 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 MSLNLQ96KJ4 702 aa13.2□□□□□ -0.3
LIG1-203ENST00000536218 A0A0B4J203 849 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 MFSD2BA6NFX1 497 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 FAM74A7A6NL05 159 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 HEPACAM2A8MVW5 462 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 PDCD5O14737 125 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 YKT6O15498 198 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 MAPK1P28482 360 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 CDH12P55289 794 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 ITGA1P56199 1179 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 PFN3P60673 137 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 CDC42P60953 191 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 RPS14P62263 151 aaKnown RBP13.19□□□□□ -0.3
LIG1-203ENST00000536218 LTB4RQ15722 352 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 ZSWIM7Q19AV6 140 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 FAM74A3Q4VXF1 159 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 ADNP2Q6IQ32 1131 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 FIP1L1Q6UN15 594 aaKnown RBP13.19□□□□□ -0.3
LIG1-203ENST00000536218 HSDL2Q6YN16 418 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 DPPA4Q7L190 304 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 NPAS3Q8IXF0 933 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 OR9Q2Q8NGE9 314 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 OR2T35Q8NGX2 323 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 PHOSPHO2Q8TCD6 241 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 YIPF5Q969M3 257 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 REG4Q9BYZ8 158 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 EMC7Q9NPA0 242 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms