RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 DEFA1P59665 94 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 DEFA3P59666 94 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 MLLT11Q13015 90 aaPredicted RBP12.37□□□□□ -0.43
LDLR-203ENST00000535915 ZNF311Q5JNZ3 666 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SLC48A1Q6P1K1 146 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 GDPGP1Q6ZNW5 385 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 USP30Q70CQ3 517 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 IL17RCQ8NAC3 791 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 NUP43Q8NFH3 380 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 OR52I1Q8NGK6 324 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 MOAP1Q96BY2 351 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 OR7D2Q96RA2 312 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SLC17A9Q9BYT1 436 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 EGLN3Q9H6Z9 239 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SMURF1Q9HCE7 757 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SNTG1Q9NSN8 517 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 GIMAP4Q9NUV9 329 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 NDUFB11Q9NX14 153 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 ERVK13-1Q9NX77 482 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SLC13A4Q9UKG4 626 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 POU2F3Q9UKI9 436 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SLC17A4Q9Y2C5 497 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 MYO9BQ13459 2157 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 A0A075B6Q4 140 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 ISM1B1AKI9 464 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 SNPHO15079 494 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 EMC8O43402 210 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 FRS3O43559 492 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 ENDOUP21128 410 aaKnown RBP12.36□□□□□ -0.43
LDLR-203ENST00000535915 CMPK1P30085 196 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 TIE1P35590 1138 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 MAN2A2P49641 1150 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 TPTEP56180 551 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 CDK5Q00535 292 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 TCEA2Q15560 299 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 RPE65Q16518 533 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 C11orf74Q86VG3 221 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 OR9A2Q8NGT5 310 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 PIK3R3Q92569 461 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 TRMT61AQ96FX7 289 aaKnown RBP12.36□□□□□ -0.43
LDLR-203ENST00000535915 ZNF582Q96NG8 517 aaPredicted RBP12.36□□□□□ -0.43
LDLR-203ENST00000535915 CTRCQ99895 268 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 KXD1Q9BQD3 176 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 C1QTNF2Q9BXJ5 285 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 PLA2G12AQ9BZM1 189 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 SSR3Q9UNL2 185 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 DIMT1Q9UNQ2 313 aaKnown RBP12.36□□□□□ -0.43
LDLR-203ENST00000535915 F3P13726 295 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 GSTM3P21266 225 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 TNFSF8P32971 234 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 IGFALSP35858 605 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 KRR1Q13601 381 aaKnown RBP12.36□□□□□ -0.43
LDLR-203ENST00000535915 DUSP6Q16828 381 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 ENTPD8Q5MY95 495 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 RNLSQ5VYX0 342 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 ZNF776Q68DI1 518 aaPredicted RBP12.36□□□□□ -0.43
LDLR-203ENST00000535915 DESI1Q6ICB0 168 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 KIAA1211LQ6NV74 962 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 VRK2Q86Y07 508 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 KIF18BQ86Y91 864 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 SRFBP1Q8NEF9 429 aaKnown RBP12.36□□□□□ -0.43
LDLR-203ENST00000535915 TEX47Q8TBZ9 253 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 BARHL1Q9BZE3 327 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 SYNPO2LQ9H987 977 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 C3orf14Q9HBI5 128 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 C14orf119Q9NWQ9 140 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 APOBEC3BQ9UH17 382 aaKnown RBP12.36□□□□□ -0.43
LDLR-203ENST00000535915 CES1P1Q9UKY3 287 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 ZNF780BQ9Y6R6 833 aa12.36□□□□□ -0.43
LDLR-203ENST00000535915 A0A087WUU8 490 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 HYKKA2RU49 373 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 CPSF4LA6NMK7 179 aaKnown RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 PROM1O43490 865 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ALPPP05187 535 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ASGR2P07307 311 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ACADMP11310 421 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ETV5P41161 510 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ETV1P50549 477 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 RORCP51449 518 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 CHRNEQ04844 493 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ENPP2Q13822 863 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 PHC2Q8IXK0 858 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 KAT2AQ92830 837 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ZG16BQ96DA0 208 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 APOOQ9BUR5 198 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 CARD8Q9Y2G2 431 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 FAM170BA6NMN3 283 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 A8MU76 341 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ZNF670-ZNF695F2Z2N8 137 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 RNGTTO60942 597 aaKnown RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 CYP7B1O75881 506 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 SNX4O95219 450 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 APOL3O95236 402 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 MYL12AP19105 171 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 GDI1P31150 447 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 STXBP1P61764 594 aaKnown RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 BTN3A2P78410 334 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 MXD1Q05195 221 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 TGM3Q08188 693 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 KLHL22Q53GT1 634 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms