RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 CATSPER1Q8NEC5 780 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 OR9I1Q8NGQ6 314 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 SLC22A8Q8TCC7 542 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 SFXN5Q8TD22 340 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 C10orf82Q8WW14 230 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 NTNG2Q96CW9 530 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 HSPBAP1Q96EW2 488 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 LCORQ96JN0 433 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-206ENST00000531480 SIGLEC12Q96PQ1 595 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 LRRC37BQ96QE4 947 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 ZBTB18Q99592 522 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 LMF2Q9BU23 707 aaKnown RBP13.36□□□□□ -0.27
CPSF1-206ENST00000531480 NXF5Q9H1B4 397 aaKnown RBP13.36□□□□□ -0.27
CPSF1-206ENST00000531480 CXorf36Q9H7Y0 433 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 FOLH1BQ9HBA9 442 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 SERHLQ9NQF3 203 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 DDX18Q9NVP1 670 aaKnown RBP13.36□□□□□ -0.27
CPSF1-206ENST00000531480 GIN1Q9NXP7 522 aa13.36□□□□□ -0.27
CPSF1-206ENST00000531480 ZNF462Q96JM2 2506 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 EML6Q6ZMW3 1958 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 OR6B1O95007 311 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 EFNA1P20827 205 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-206ENST00000531480 GPC1P35052 558 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 SOX3P41225 446 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 POLR2JP52435 117 aaKnown RBP13.35□□□□□ -0.27
CPSF1-206ENST00000531480 DGKQP52824 942 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 NME5P56597 212 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 ZNF169Q14929 603 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-206ENST00000531480 OR1C1Q15619 314 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 NTRK2Q16620 822 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 PLEKHN1Q494U1 663 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-206ENST00000531480 BLOC1S3Q6QNY0 202 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 OPN5Q6U736 354 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 NPSR1Q6W5P4 371 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 CLECL1Q8IZS7 167 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 TMEM156Q8N614 296 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 HORMAD2Q8N7B1 307 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 TEX19Q8NA77 164 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 GOLM1Q8NBJ4 401 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 VPS37AQ8NEZ2 397 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 MOAP1Q96BY2 351 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 SPACA9Q96E40 222 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-206ENST00000531480 SGCZQ96LD1 299 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 MS4A4EQ96PG1 132 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 GAL3ST4Q96RP7 486 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 RABEP2Q9H5N1 569 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 C3orf14Q9HBI5 128 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 GPATCH2Q9NW75 528 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 LRFN1Q9P244 771 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 MAP10Q9P2G4 905 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 PCDHGA10Q9Y5H3 936 aa13.35□□□□□ -0.27
CPSF1-206ENST00000531480 C9JVG2 144 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 SUV39H1O43463 412 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 ERN1O75460 977 aaKnown RBP13.34□□□□□ -0.27
CPSF1-206ENST00000531480 ATP5HO75947 161 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 ABCD3P28288 659 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 CASRP41180 1078 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 CCT3P49368 545 aaKnown RBP13.34□□□□□ -0.27
CPSF1-206ENST00000531480 NR0B1P51843 470 aaKnown RBP13.34□□□□□ -0.27
CPSF1-206ENST00000531480 CORO7P57737 925 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 STX1BP61266 288 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 PRR5P85299 388 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 NFATC3Q12968 1075 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 INAQ16352 499 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 HLA-DQA1Q5Y7H0 255 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 SPINK14Q6IE38 97 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 MFSD12Q6NUT3 480 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 TMEM81Q6P7N7 255 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 ZNF771Q7L3S4 317 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-206ENST00000531480 TAGAPQ8N103 731 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 CDRT4Q8N9R6 151 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 NUP43Q8NFH3 380 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 OR56A1Q8NGH5 318 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 RNF138Q8WVD3 245 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 ASB15Q8WXK1 588 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 PHF12Q96QT6 1004 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 OR52E6Q96RD3 313 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 BARD1Q99728 777 aaKnown RBP13.34□□□□□ -0.27
CPSF1-206ENST00000531480 ANKRD10Q9NXR5 420 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 NPFFR2Q9Y5X5 522 aa13.34□□□□□ -0.27
CPSF1-206ENST00000531480 ASPDHA6ND91 283 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 A8MVJ9 347 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 NME2P1O60361 137 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 NME6O75414 186 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-206ENST00000531480 SLC25A12O75746 678 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 SOX30O94993 753 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 NKX2-2O95096 273 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 F10P00742 488 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 ZCCHC18P0CG32 403 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 HOXB9P17482 250 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-206ENST00000531480 NME2P22392 152 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 PTPN6P29350 595 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 ADSLP30566 484 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-206ENST00000531480 MAN2A2P49641 1150 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 RASSF2P50749 326 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 MNAT1P51948 309 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 NRG3P56975 720 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 CYP27C1Q4G0S4 372 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 PRICKLE2Q7Z3G6 844 aa13.33□□□□□ -0.28
CPSF1-206ENST00000531480 PTRH1Q86Y79 214 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms