RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 RNF4P78317 190 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 GUCY1A3Q02108 690 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 DUSP2Q05923 314 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 FUT7Q11130 342 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 GTF3C1Q12789 2109 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 MAP4K2Q12851 820 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 LTB4RQ15722 352 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 PRICKLE4Q2TBC4 344 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 SLC9B1Q4ZJI4 515 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 ZNF628Q5EBL2 1059 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 CPTPQ5TA50 214 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 HLA-DQA1Q5Y7H0 255 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 ANKRD26P1Q6NSI1 321 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 C3P1Q6ZMU1 363 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 MAVSQ7Z434 540 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 ARMC10Q8N2F6 343 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 ZNF321PQ8N8H1 164 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 ADCY4Q8NFM4 1077 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 CEP70Q8NHQ1 597 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 DOK4Q8TEW6 326 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 PHF10Q8WUB8 498 aaKnown RBP9.36□□□□□ -0.91
VPS28-204ENST00000526054 ERP27Q96DN0 273 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 ZBED6CLQ96FA7 236 aaPredicted RBP9.36□□□□□ -0.91
VPS28-204ENST00000526054 GAL3ST4Q96RP7 486 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 SIKE1Q9BRV8 207 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 DPY30Q9C005 99 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 OR10A5Q9H207 317 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 RYDENQ9NUL5 291 aaKnown RBP9.36□□□□□ -0.91
VPS28-204ENST00000526054 PRODH2Q9UF12 536 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 BCAP29Q9UHQ4 241 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 ADAM21Q9UKJ8 722 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 KLF13Q9Y2Y9 288 aaPredicted RBP9.36□□□□□ -0.91
VPS28-204ENST00000526054 ANKRD17O75179 2603 aaKnown RBP9.36□□□□□ -0.91
VPS28-204ENST00000526054 E9PLN8 166 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 ZNF195O14628 629 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 PRKNO60260 465 aaPredicted RBP9.35□□□□□ -0.91
VPS28-204ENST00000526054 EDF1O60869 148 aaKnown RBP9.35□□□□□ -0.91
VPS28-204ENST00000526054 COQ9O75208 318 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 ITGA10O75578 1167 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 IFI6P09912 130 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 IDO1P14902 403 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 TRHRP34981 398 aaPredicted RBP9.35□□□□□ -0.91
VPS28-204ENST00000526054 PTGER1P34995 402 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 GPC1P35052 558 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 MEOX1P50221 254 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 HLCSP50747 726 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 SSR4P51571 173 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 AQP5P55064 265 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 SLC37A1P57057 533 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 GNGT1P63211 74 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 MRPS35P82673 323 aaKnown RBP9.35□□□□□ -0.91
VPS28-204ENST00000526054 MGAT2Q10469 447 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 HSPB3Q12988 150 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 EBPQ15125 230 aaKnown RBP9.35□□□□□ -0.91
VPS28-204ENST00000526054 RPS6KA2Q15349 733 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 PRSS53Q2L4Q9 553 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 DPY19L1Q2PZI1 675 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 ZNF385BQ569K4 471 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 RNFT1Q5M7Z0 435 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 FAM111BQ6SJ93 734 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 EPGNQ6UW88 154 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 ZNF227Q86WZ6 799 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 DOLPP1Q86YN1 238 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 C9orf40Q8IXQ3 194 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 ZNF295-AS1Q8N0V1 137 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 CYP4Z2PQ8N1L4 340 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 TMEM156Q8N614 296 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 KRTCAP2Q8N6L1 136 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 POGLUT1Q8NBL1 392 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 OR7A2PQ8NGA2 310 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 SLC22A8Q8TCC7 542 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 CA5BP1Q8WTZ4 195 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 KAT2AQ92830 837 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 CIDECQ96AQ7 238 aaPredicted RBP9.35□□□□□ -0.91
VPS28-204ENST00000526054 SDCCAG3Q96C92 435 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 CTHRC1Q96CG8 243 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 AMDHD1Q96NU7 426 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 ZBTB18Q99592 522 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 VKORC1Q9BQB6 163 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 CCDC28BQ9BUN5 200 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 WWTR1Q9GZV5 400 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 GLIPR2Q9H4G4 154 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 TRIM45Q9H8W5 580 aaPredicted RBP9.35□□□□□ -0.91
VPS28-204ENST00000526054 TCF7L2Q9NQB0 619 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 ACSS1Q9NUB1 689 aaPredicted RBP9.35□□□□□ -0.91
VPS28-204ENST00000526054 AIG1Q9NVV5 245 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 MYOTQ9UBF9 498 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 ZNF639Q9UID6 485 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 ITGB1BP2Q9UKP3 347 aa9.35□□□□□ -0.91
VPS28-204ENST00000526054 YARS2Q9Y2Z4 477 aaKnown RBP9.35□□□□□ -0.91
VPS28-204ENST00000526054 EXPH5Q8NEV8 1989 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 C2orf92A0A1B0GVN3 265 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 KLRC4-KLRK1H3BQV0 150 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 WWP2O00308 870 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 UBDO15205 165 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 CDC40O60508 579 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS28-204ENST00000526054 PLOD3O60568 738 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 OR2J2O76002 312 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 CBX7O95931 251 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 CLPSP04118 112 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms