RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ALG5Q9Y673 324 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 TSPAN11A1L157 253 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 SYNDIG1LA6NDD5 238 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 FAM183AA6NL82 134 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 HIDE1A8MVS5 230 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 RHOP08100 348 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 ACP2P11117 423 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 ACADMP11310 421 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 CDH11P55287 796 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 ZNF628Q5EBL2 1059 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 C3orf38Q5JPI3 329 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 ZNF57Q68EA5 555 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 SFTPA1Q8IWL2 248 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 NRSN1Q8IZ57 195 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 NXPE3Q969Y0 559 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 RGMAQ96B86 450 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 AMDHD1Q96NU7 426 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 SMAD5Q99717 465 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 KLHL31Q9H511 634 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 IRAK3Q9Y616 596 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 FAM25AB3EWG3 89 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 FAM25CB3EWG5 89 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 FAM25GB3EWG6 89 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 FGBP02675 491 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 DDX5P17844 614 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 CCR8P51685 355 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 CLCNKAP51800 687 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 RAB8AP61006 207 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 EFR3AQ14156 821 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 CCDC58Q4VC31 144 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 CNKSR3Q6P9H4 555 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 VRK2Q86Y07 508 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 DCUN1D3Q8IWE4 304 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 TMEM145Q8NBT3 493 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 SIMC1Q8NDZ2 872 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 NEIL3Q8TAT5 605 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 TMEM163Q8TC26 289 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 SENP5Q96HI0 755 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 LRRC3BQ96PB8 259 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 OSGEPL1Q9H4B0 414 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 TRPV5Q9NQA5 729 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC35C2Q9NQQ7 365 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC13A4Q9UKG4 626 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 CSNK1G3Q9Y6M4 447 aa8.71□□□□□ -1.02
LIMCH1-215ENST00000512632 PRRT4C9JH25 899 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 KIAA0355O15063 1070 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC2A10O95528 541 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ADH1AP07327 375 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 GNSP15586 552 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ALAS2P22557 587 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 IL12RB1P42701 662 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 GPR4P46093 362 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 WSCD2Q2TBF2 565 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 YIF1BQ5BJH7 314 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 C9orf64Q5T6V5 341 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 PPP2R2DQ66LE6 453 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC36A4Q6YBV0 504 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 BBS1Q8NFJ9 593 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 OR8K5Q8NH50 307 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ZFPM2Q8WW38 1151 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 AP3S1Q92572 193 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 QRFPRQ96P65 431 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 TBX5Q99593 518 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 LGR4Q9BXB1 951 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ZBP1Q9H171 429 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 IRF2BPLQ9H1B7 796 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 DPEP2Q9H4A9 486 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 B3GAT2Q9NPZ5 323 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 GPSM3Q9Y4H4 160 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 GSAPA4D1B5 854 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 HOXB3P14651 431 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC1A3P43003 542 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 GPLD1P80108 840 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 CHRNEQ04844 493 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 DUSP2Q05923 314 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 LRRC32Q14392 662 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 DHCR24Q15392 516 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 FNDC3BQ53EP0 1204 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 FAM46CQ5VWP2 391 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 PLPP4Q5VZY2 271 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 TMEM107Q6UX40 140 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ZNF793Q6ZN11 406 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 QSOX2Q6ZRP7 698 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ASB18Q6ZVZ8 466 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 FAM181AQ8N9Y4 354 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 PPP1R3EQ9H7J1 279 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ISM1B1AKI9 464 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 HRO43593 1189 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ALPPP05187 535 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ERVFC1P60507 584 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 RAB40BQ12829 278 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 TCEA2Q15560 299 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 PIP5KL1Q5T9C9 394 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 KLBQ86Z14 1044 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 NKAIN4Q8IVV8 208 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 DOK4Q8TEW6 326 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 C17orf50Q8WW18 174 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 PRRC1Q96M27 445 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC38A2Q96QD8 506 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms