RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CMTM5Q96DZ9 223 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 MTERF3Q96E29 417 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 SPDL1Q96EA4 605 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 TEX37Q96LM6 180 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 OR1F2PQ96R84 312 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 CRB3Q9BUF7 120 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 RSRP1Q9BUV0 290 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 LHPPQ9H008 270 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 TMEM45AQ9NWC5 275 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 KCMF1Q9P0J7 381 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 ZNF282Q9UDV7 671 aaPredicted RBP11.32□□□□□ -0.6
UPF3A-210ENST00000493727 UTS2RQ9UKP6 389 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 PSME2Q9UL46 239 aa11.32□□□□□ -0.6
UPF3A-210ENST00000493727 SCN2AQ99250 2005 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 SYNDIG1LA6NDD5 238 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 CCT8L1PA6NM43 557 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 FAM227AF5H4B4 570 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 EBAG9O00559 213 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 SOCS6O14544 535 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 CFLARO15519 480 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 PDPK1O15530 556 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 HPP00738 406 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 IL6P05231 212 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 SNRPB2P08579 225 aaKnown RBP11.31□□□□□ -0.6
UPF3A-210ENST00000493727 ELAVL4P26378 380 aaKnown RBP11.31□□□□□ -0.6
UPF3A-210ENST00000493727 IL12AP29459 219 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 NTSP30990 170 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 C21orf58P58505 322 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 SLC13A2Q13183 592 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 CYLC2Q14093 348 aaPredicted RBP11.31□□□□□ -0.6
UPF3A-210ENST00000493727 RCAN2Q14206 197 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 SPANXN4Q5MJ08 99 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 SLC48A1Q6P1K1 146 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 KIRREL2Q6UWL6 708 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 RIMKLAQ8IXN7 391 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 ZNF595Q8IYB9 648 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 POU5F2Q8N7G0 328 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 ST6GALNAC3Q8NDV1 305 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 VPS37AQ8NEZ2 397 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.31□□□□□ -0.6
UPF3A-210ENST00000493727 DNAJB14Q8TBM8 379 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 TANKQ92844 425 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 MIEF2Q96C03 454 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 BBS4Q96RK4 519 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 DUSP26Q9BV47 211 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 RMND5AQ9H871 391 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 PRTFDC1Q9NRG1 225 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 C14orf105Q9NVL8 296 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 EHD3Q9NZN3 535 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 CTSFQ9UBX1 484 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 ATP6V1HQ9UI12 483 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 ZNF780BQ9Y6R6 833 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 SETD2Q9BYW2 2564 aaPredicted RBP11.31□□□□□ -0.6
UPF3A-210ENST00000493727 SCN3AQ9NY46 2000 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 MTORP42345 2549 aa11.31□□□□□ -0.6
UPF3A-210ENST00000493727 LOC100653049A0A140TA62 436 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 DYTNA2CJ06 578 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 GABRR3A8MPY1 467 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 CYR61O00622 381 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 PGRMC2O15173 223 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 KRT34O76011 436 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 PGRP06401 933 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 LAMP1P11279 417 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 COX4I1P13073 169 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 PRF1P14222 555 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 PRDX6P30041 224 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 NTF4P34130 210 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 DGKQP52824 942 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 PER3P56645 1201 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 FOXL2P58012 376 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 AP2B1P63010 937 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 STX4Q12846 297 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 STX5Q13190 355 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 PDE7AQ13946 482 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 ZNF169Q14929 603 aaPredicted RBP11.3□□□□□ -0.6
UPF3A-210ENST00000493727 KRT72Q14CN4 511 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 VPS26BQ4G0F5 336 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 ANXA8L1Q5VT79 327 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 FAM91A1Q658Y4 838 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 OR4F3Q6IEY1 312 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 LRFN4Q6PJG9 635 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 ISLR2Q6UXK2 745 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 FUNDC1Q8IVP5 155 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 ZC3H7AQ8IWR0 971 aaKnown RBP11.3□□□□□ -0.6
UPF3A-210ENST00000493727 SLC34A3Q8N130 599 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 NATD1Q8N6N6 113 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 OR11G2Q8NGC1 345 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 OR4K14Q8NGD5 310 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 STT3BQ8TCJ2 826 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 VPS33AQ96AX1 596 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 OR52E6Q96RD3 313 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 LMF1Q96S06 567 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 SLC35C2Q9NQQ7 365 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 TAGLN3Q9UI15 199 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 EXO1Q9UQ84 846 aaKnown RBP11.3□□□□□ -0.6
UPF3A-210ENST00000493727 NTNG1Q9Y2I2 539 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 NDUFAF1Q9Y375 327 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 MMACHCQ9Y4U1 282 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 HIVEP1P15822 2718 aa11.3□□□□□ -0.6
UPF3A-210ENST00000493727 DCHS2Q6V1P9 2916 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms