RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 OR52R1Q8NGF1 315 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 RDH11Q8TC12 318 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 SELENOMQ8WWX9 145 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 HGDQ93099 445 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 PIGTQ969N2 578 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 KLHL29Q96CT2 875 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 GPR78Q96P69 363 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 NODALQ96S42 347 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 ITPAQ9BY32 194 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 TSPYL1Q9H0U9 437 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 BRF2Q9HAW0 419 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 PFDN4Q9NQP4 134 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 GALNT8Q9NY28 637 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 ZNF226Q9NYT6 803 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 ZNF639Q9UID6 485 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 PACSIN3Q9UKS6 424 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 CES1P1Q9UKY3 287 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 NFU1Q9UMS0 254 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 FRG2CA6NGY1 282 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 A8MXE2 369 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 TO15178 435 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 UGT2B11O75310 529 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 CRHP06850 196 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 INHBAP08476 426 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 SRD5A2P31213 254 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 ALDH9A1P49189 494 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 HMGCS1Q01581 520 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 GUCY2DQ02846 1103 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 C2orf54Q08AI8 447 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 MGAT2Q10469 447 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 FOXF2Q12947 444 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 EXOSC7Q15024 291 aaKnown RBP12.08□□□□□ -0.48
HMGB3-204ENST00000448905 ERCC6LQ2NKX8 1250 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 TRMT12Q53H54 448 aaKnown RBP12.08□□□□□ -0.48
HMGB3-204ENST00000448905 DCST1Q5T197 706 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 CLEC9AQ6UXN8 241 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 GRAMD2AQ8IUY3 354 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 GBP7Q8N8V2 638 aaPredicted RBP12.08□□□□□ -0.48
HMGB3-204ENST00000448905 WDSUB1Q8N9V3 476 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 OR4F6Q8NGB9 312 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 SLC44A1Q8WWI5 657 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 TM4SF18Q96CE8 201 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 CTHRC1Q96CG8 243 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 ERP27Q96DN0 273 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 SFXN2Q96NB2 322 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 SLC39A3Q9BRY0 314 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 OR2B2Q9GZK3 357 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 ZNF395Q9H8N7 513 aaPredicted RBP12.08□□□□□ -0.48
HMGB3-204ENST00000448905 GALNT9Q9HCQ5 603 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 SDHAF3Q9NRP4 125 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 MAT2BQ9NZL9 334 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 VPS29Q9UBQ0 182 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 PCTPQ9UKL6 214 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 DLGAP4Q9Y2H0 992 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 GPR55Q9Y2T6 319 aaPredicted RBP12.08□□□□□ -0.48
HMGB3-204ENST00000448905 PLLPQ9Y342 182 aa12.08□□□□□ -0.48
HMGB3-204ENST00000448905 SPG11Q96JI7 2443 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 ZNF469Q96JG9 3925 aaPredicted RBP12.07□□□□□ -0.48
HMGB3-204ENST00000448905 HMX2A2RU54 273 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 PLOD2O00469 737 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 MSTNO14793 375 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 SMPD2O60906 423 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 ALDOAP04075 364 aaKnown RBP12.07□□□□□ -0.48
HMGB3-204ENST00000448905 CD53P19397 219 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 FPR1P21462 350 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 CNTFP26441 200 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 IL12BP29460 328 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 SLCO1A2P46721 670 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 PCYT1AP49585 367 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 SERPINB9P50453 376 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 GFRA1P56159 465 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 POU4F3Q15319 338 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 GGTA1PQ4G0N0 100 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 TECRLQ5HYJ1 363 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 ADGRE4PQ86SQ3 457 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 CCDC116Q8IYX3 515 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 TMBIM1Q969X1 311 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 ADOQ96SZ5 270 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 MRPL57Q9BQC6 102 aaKnown RBP12.07□□□□□ -0.48
HMGB3-204ENST00000448905 GIMAP4Q9NUV9 329 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 DKKL1Q9UK85 242 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 UTS2RQ9UKP6 389 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 DTX4Q9Y2E6 619 aa12.07□□□□□ -0.48
HMGB3-204ENST00000448905 DNAJC13O75165 2243 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 LINC01387J3KSC0 135 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 SMNDC1O75940 238 aaKnown RBP eCLIP12.06□□□□□ -0.48
HMGB3-204ENST00000448905 CBX7O95931 251 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 PDYNP01213 254 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 KRT6AP02538 564 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 KRT6BP04259 564 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 PEPDP12955 493 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 MPIP34949 423 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 PTGDSP41222 190 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 KRT6CP48668 564 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 STARP49675 285 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 EMDP50402 254 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 PNLIPRP2P54317 469 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 HEPACAMQ14CZ8 416 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 LGSNQ5TDP6 509 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 ZDHHC24Q6UX98 284 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms