RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 DCAF7P61962 342 aa18.95■□□□□ 0.62
SDC1-205ENST00000447124 RPP38P78345 283 aaKnown RBP18.95■□□□□ 0.62
SDC1-205ENST00000447124 WIPI1Q5MNZ9 446 aaPredicted RBP18.95■□□□□ 0.62
SDC1-205ENST00000447124 VASNQ6EMK4 673 aa18.95■□□□□ 0.62
SDC1-205ENST00000447124 TMEM81Q6P7N7 255 aa18.95■□□□□ 0.62
SDC1-205ENST00000447124 TDRPQ86YL5 185 aa18.95■□□□□ 0.62
SDC1-205ENST00000447124 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.95■□□□□ 0.62
SDC1-205ENST00000447124 UBLCP1Q8WVY7 318 aaPredicted RBP18.95■□□□□ 0.62
SDC1-205ENST00000447124 CCDC126Q96EE4 140 aa18.95■□□□□ 0.62
SDC1-205ENST00000447124 METTL7AQ9H8H3 244 aa18.95■□□□□ 0.62
SDC1-205ENST00000447124 MCCC2Q9HCC0 563 aa18.95■□□□□ 0.62
SDC1-205ENST00000447124 GALNT9Q9HCQ5 603 aa18.95■□□□□ 0.62
SDC1-205ENST00000447124 PFDN4Q9NQP4 134 aa18.95■□□□□ 0.62
SDC1-205ENST00000447124 EXO1Q9UQ84 846 aaKnown RBP18.95■□□□□ 0.62
SDC1-205ENST00000447124 FRG2CA6NGY1 282 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 SMIM23A6NLE4 172 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 CT45A8P0DMV1 189 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 CT45A9P0DMV2 189 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 BMP7P18075 431 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 C2orf80Q0P641 193 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 PLCXD2Q0VAA5 305 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 HEPACAMQ14CZ8 416 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 CT45A2Q5DJT8 189 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 SLC30A6Q6NXT4 461 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 ANGPTL8Q6UXH0 198 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 TRIM46Q7Z4K8 759 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 YRDCQ86U90 279 aaKnown RBP18.94■□□□□ 0.62
SDC1-205ENST00000447124 WDSUB1Q8N9V3 476 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 NAXEQ8NCW5 288 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 OR7G2Q8NG99 324 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 EPS8L3Q8TE67 593 aaKnown RBP18.94■□□□□ 0.62
SDC1-205ENST00000447124 TMBIM1Q969X1 311 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 UGT2B28Q9BY64 529 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 SHCBP1LQ9BZQ2 653 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 L2HGDHQ9H9P8 463 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 GRID1Q9ULK0 1009 aa18.94■□□□□ 0.62
SDC1-205ENST00000447124 CCDC151A5D8V7 595 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 MYO1GB0I1T2 1018 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 SNPHO15079 494 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 REM1O75628 298 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 BCAS2O75934 225 aaPredicted RBP18.93■□□□□ 0.62
SDC1-205ENST00000447124 EPPINO95925 133 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 CPA3P15088 417 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 POU3F2P20265 443 aaPredicted RBP18.93■□□□□ 0.62
SDC1-205ENST00000447124 CCT5P48643 541 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 CORO7P57737 925 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 SLC18A2Q05940 514 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 CCDC153Q494R4 210 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 ACSF3Q4G176 576 aaPredicted RBP18.93■□□□□ 0.62
SDC1-205ENST00000447124 NHSL2Q5HYW2 709 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 SPDYAQ5MJ70 313 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 DCST1Q5T197 706 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 FAM71E1Q6IPT2 247 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 NPSR1Q6W5P4 371 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 FRMD7Q6ZUT3 714 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 CNPY4Q8N129 248 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 FAM83FQ8NEG4 500 aaPredicted RBP18.93■□□□□ 0.62
SDC1-205ENST00000447124 OR1J4Q8NGS1 313 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 ERP27Q96DN0 273 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 WDYHV1Q96HA8 205 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 VSTM2LQ96N03 204 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 BTBD9Q96Q07 612 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 PRDM14Q9GZV8 571 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 OXSMQ9NWU1 459 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 CCL27Q9Y4X3 112 aa18.93■□□□□ 0.62
SDC1-205ENST00000447124 ARHGAP21Q5T5U3 1957 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 PLOD3O60568 738 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 TSPAN2O60636 221 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 CDH16O75309 829 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 DDCP20711 480 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 CEACAM8P31997 349 aaPredicted RBP18.92■□□□□ 0.62
SDC1-205ENST00000447124 TOMM20Q15388 145 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 POMZP3Q6PJE2 187 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 SAMD14Q8IZD0 417 aaPredicted RBP18.92■□□□□ 0.62
SDC1-205ENST00000447124 TNIP2Q8NFZ5 429 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 OR4N2Q8NGD1 307 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 TRIM44Q96DX7 344 aaPredicted RBP18.92■□□□□ 0.62
SDC1-205ENST00000447124 SLC35A4Q96G79 324 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 COL21A1Q96P44 957 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 OSBPL11Q9BXB4 747 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 FOLH1BQ9HBA9 442 aa18.92■□□□□ 0.62
SDC1-205ENST00000447124 POLR3HQ9Y535 204 aaPredicted RBP18.92■□□□□ 0.62
SDC1-205ENST00000447124 OR6C70A6NIJ9 312 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 CAPN3P20807 821 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 SNTA1Q13424 505 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 KIAA0040Q15053 153 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 SLC25A35Q3KQZ1 300 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 C4orf33Q8N1A6 199 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 ABTB1Q969K4 478 aaPredicted RBP18.91■□□□□ 0.62
SDC1-205ENST00000447124 BBS4Q96RK4 519 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 ADOQ96SZ5 270 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 SERHLQ9NQF3 203 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 GIMAP4Q9NUV9 329 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 TAS2R7Q9NYW3 318 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 ITGB1BP2Q9UKP3 347 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 MAPRE3Q9UPY8 281 aa18.91■□□□□ 0.62
SDC1-205ENST00000447124 KIAA1549Q9HCM3 1950 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 PRAMEF25A6NGN4 478 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 B4DXG7 233 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 COPEO14579 308 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms