RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 NPSR1Q6W5P4 371 aa14.75□□□□□ -0.05
HMGA1-204ENST00000401473 OR5L2Q8NGL0 311 aa14.75□□□□□ -0.05
HMGA1-204ENST00000401473 ZFP90Q8TF47 636 aa14.75□□□□□ -0.05
HMGA1-204ENST00000401473 HOXB13Q92826 284 aaPredicted RBP14.75□□□□□ -0.05
HMGA1-204ENST00000401473 AGAP4Q96P64 663 aa14.75□□□□□ -0.05
HMGA1-204ENST00000401473 IL1RL2Q9HB29 575 aa14.75□□□□□ -0.05
HMGA1-204ENST00000401473 ARL8BQ9NVJ2 186 aa14.75□□□□□ -0.05
HMGA1-204ENST00000401473 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.75□□□□□ -0.05
HMGA1-204ENST00000401473 PRODH2Q9UF12 536 aa14.75□□□□□ -0.05
HMGA1-204ENST00000401473 VPS4AQ9UN37 437 aa14.75□□□□□ -0.05
HMGA1-204ENST00000401473 A0A096LPI6 279 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 TRBV5-3A0A0A0MS03 114 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 COQ9O75208 318 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 ERN1O75460 977 aaKnown RBP14.74□□□□□ -0.05
HMGA1-204ENST00000401473 ITGA10O75578 1167 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 UNC5CO95185 931 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 ANP32DO95626 131 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 PPICP45877 212 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 MAN2A2P49641 1150 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 NR0B1P51843 470 aaKnown RBP14.74□□□□□ -0.05
HMGA1-204ENST00000401473 MVDP53602 400 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 STX5Q13190 355 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 EXOSC6Q5RKV6 272 aaKnown RBP14.74□□□□□ -0.05
HMGA1-204ENST00000401473 ZNF468Q5VIY5 522 aaPredicted RBP14.74□□□□□ -0.05
HMGA1-204ENST00000401473 SAXO2Q658L1 398 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 FAM91A1Q658Y4 838 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 REP15Q6BDI9 236 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 LINC00696Q6ZRV3 163 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 SLC5A8Q8N695 610 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 OR4N2Q8NGD1 307 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 FBXO30Q8TB52 745 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 SFXN5Q8TD22 340 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 NEURL3Q96EH8 262 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 MS4A4EQ96PG1 132 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 LMF1Q96S06 567 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 TRIM8Q9BZR9 551 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 CFL2Q9Y281 166 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 KCNH1O95259 989 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 PDGFAP04085 211 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 DRD5P21918 477 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 MAPRE2Q15555 327 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 MMEL1Q495T6 779 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 PIGGQ5H8A4 983 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 CRB2Q5IJ48 1285 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 COX20Q5RI15 118 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 TRIML2Q8N7C3 387 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 EXD3Q8N9H8 876 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 OR56A1Q8NGH5 318 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 PNPT1Q8TCS8 783 aaKnown RBP14.74□□□□□ -0.05
HMGA1-204ENST00000401473 TP53INP1Q96A56 240 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 MOAP1Q96BY2 351 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 RCN3Q96D15 328 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 CMTM5Q96DZ9 223 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 ABHD17AQ96GS6 310 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 LCORQ96JN0 433 aaPredicted RBP14.74□□□□□ -0.05
HMGA1-204ENST00000401473 BTBD9Q96Q07 612 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 RASL10BQ96S79 203 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 SMAD5Q99717 465 aaKnown RBP14.74□□□□□ -0.05
HMGA1-204ENST00000401473 SLC39A3Q9BRY0 314 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 IKZF5Q9H5V7 419 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 TPT1P8Q9HAU6 139 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 KCNE3Q9Y6H6 103 aa14.74□□□□□ -0.05
HMGA1-204ENST00000401473 CLIC1O00299 241 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 NADKO95544 446 aaPredicted RBP14.73□□□□□ -0.05
HMGA1-204ENST00000401473 F10P00742 488 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 ACP2P11117 423 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 RHDQ02161 417 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 DUSP5Q16690 384 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 MEP1AQ16819 746 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 COQ5Q5HYK3 327 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 ISLR2Q6UXK2 745 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 RNF130Q86XS8 419 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 BEST3Q8N1M1 668 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 C10orf111Q8N326 155 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 CDRT4Q8N9R6 151 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 C17orf47Q8NEP4 570 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 OR5D16Q8NGK9 328 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 SLC9A6Q92581 669 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 SLC35A4Q96G79 324 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 ZNF354BQ96LW1 612 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 LMF2Q9BU23 707 aaKnown RBP14.73□□□□□ -0.05
HMGA1-204ENST00000401473 ANKRD10Q9NXR5 420 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 LHX6Q9UPM6 363 aa14.73□□□□□ -0.05
HMGA1-204ENST00000401473 YARS2Q9Y2Z4 477 aaKnown RBP14.73□□□□□ -0.05
HMGA1-204ENST00000401473 PCDHGA9Q9Y5G4 932 aaKnown RBP14.73□□□□□ -0.05
HMGA1-204ENST00000401473 BBIP1A8MTZ0 92 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 FXYD1O00168 92 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 MRASO14807 208 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 AIM2O14862 343 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 CBX6O95503 412 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 ALPPP05187 535 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 MATN1P21941 496 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 GABRA3P34903 492 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 CHI3L1P36222 383 aaPredicted RBP14.72□□□□□ -0.05
HMGA1-204ENST00000401473 ZNF155Q12901 538 aaPredicted RBP14.72□□□□□ -0.05
HMGA1-204ENST00000401473 NFYCQ13952 458 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 CAPRIN1Q14444 709 aaKnown RBP14.72□□□□□ -0.05
HMGA1-204ENST00000401473 IRAK1BP1Q5VVH5 260 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 HLA-DQA1Q5Y7H0 255 aa14.72□□□□□ -0.05
HMGA1-204ENST00000401473 ZCCHC12Q6PEW1 402 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms