RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 COMMD2Q86X83 199 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 ADAMTS19Q8TE59 1207 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 CITED4Q96RK1 184 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 PINK1Q9BXM7 581 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 PITHD1Q9GZP4 211 aaPredicted RBP17.5■□□□□ 0.39
USP48-204ENST00000400301 MTHFD2LQ9H903 347 aaPredicted RBP17.5■□□□□ 0.39
USP48-204ENST00000400301 NEK6Q9HC98 313 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 Q9N2J8 555 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 AKAP7Q9P0M2 348 aaPredicted RBP17.5■□□□□ 0.39
USP48-204ENST00000400301 UNC119BA6NIH7 251 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 ELOA3DA6NLF2 546 aaPredicted RBP17.5■□□□□ 0.39
USP48-204ENST00000400301 CAPNS1P04632 268 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 ELOA3BQ3SY89 546 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 C7orf57Q8NEG2 295 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 VN1R2Q8NFZ6 395 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 ELOA3Q8NG57 546 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 VMP1Q96GC9 406 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 SLC41A3Q96GZ6 507 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 TAAR2Q9P1P5 351 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 CLCA3PQ9Y6N3 262 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 PRRT4C9JH25 899 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 XKRYO14609 159 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 CASC3O15234 703 aaKnown RBP17.5■□□□□ 0.39
USP48-204ENST00000400301 PRODHO43272 600 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 PPP3R1P63098 170 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 PON3Q15166 354 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 Q8N402 240 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 ZNF248Q8NDW4 579 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 DGAT2Q96PD7 388 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 APOOQ9BUR5 198 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 SAP130Q9H0E3 1048 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 QRSL1Q9H0R6 528 aaKnown RBP17.5■□□□□ 0.39
USP48-204ENST00000400301 PRSS16Q9NQE7 514 aa17.5■□□□□ 0.39
USP48-204ENST00000400301 CPNE3O75131 537 aaKnown RBP17.49■□□□□ 0.39
USP48-204ENST00000400301 SERPINA3P01011 423 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 GJA4P35212 333 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 OMPP47874 163 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 PLBD1Q6P4A8 553 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 CCDC80Q76M96 950 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 SAMD8Q96LT4 415 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 FAM83CQ9BQN1 747 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 BEX2Q9BXY8 128 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 RMI1Q9H9A7 625 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 EXTL2Q9UBQ6 330 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 CCL27Q9Y4X3 112 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 PCDHGB7Q9Y5F8 929 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 CSNK1G3Q9Y6M4 447 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 WDR81Q562E7 1941 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 UPK1AO00322 258 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 PRKRAO75569 313 aaKnown RBP17.49■□□□□ 0.39
USP48-204ENST00000400301 CDC123O75794 336 aaPredicted RBP17.49■□□□□ 0.39
USP48-204ENST00000400301 TRA2BP62995 288 aaKnown RBP17.49■□□□□ 0.39
USP48-204ENST00000400301 ZNF267Q14586 743 aaPredicted RBP17.49■□□□□ 0.39
USP48-204ENST00000400301 FIGLAQ6QHK4 219 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 ACER3Q9NUN7 267 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 A8MUA0 341 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 MCIDASD6RGH6 385 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 YES1P07947 543 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 AK4P27144 223 aaPredicted RBP17.49■□□□□ 0.39
USP48-204ENST00000400301 SLC6A6P31641 620 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 XAF1Q6GPH4 301 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 SYCE2Q6PIF2 218 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 MROQ9BYG7 248 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 POLMQ9NP87 494 aaPredicted RBP17.49■□□□□ 0.39
USP48-204ENST00000400301 TMEM138Q9NPI0 162 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 CCDC59Q9P031 241 aaKnown RBP17.49■□□□□ 0.39
USP48-204ENST00000400301 LCTP09848 1927 aa17.49■□□□□ 0.39
USP48-204ENST00000400301 C2orf92A0A1B0GVN3 265 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 CLDN2P57739 230 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 NNATQ16517 81 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 ZNF542PQ5EBM4 170 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 CPOQ8IVL8 374 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 DTX3Q8N9I9 347 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 PROKR2Q8NFJ6 384 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 C16orf58Q96GQ5 468 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 GDE1Q9NZC3 331 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 A0A1B0GW55 424 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 GRXCR1A8MXD5 290 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 C2orf74A8MZ97 194 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 KCNJ13O60928 360 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 REM1O75628 298 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 DUX4L2P0CJ85 424 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 DUX4L3P0CJ86 424 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 DUX4L4P0CJ87 422 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 DUX4L5P0CJ88 424 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 DUX4L6P0CJ89 424 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 DUX4L7P0CJ90 424 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 HK1P19367 917 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 TNFSF8P32971 234 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 SOWAHCQ53LP3 525 aaPredicted RBP17.48■□□□□ 0.39
USP48-204ENST00000400301 VRK2Q86Y07 508 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 LAS2Q8IYD9 372 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 SAMD12Q8N8I0 201 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 ZNF566Q969W8 418 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 DUX4Q9UBX2 424 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 FBXL21Q9UKT6 434 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 PPIL1Q9Y3C6 166 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 RGPD3A6NKT7 1758 aaPredicted RBP17.48■□□□□ 0.39
USP48-204ENST00000400301 RGPD4Q7Z3J3 1758 aa17.48■□□□□ 0.39
USP48-204ENST00000400301 KCNE1BA0A087WTH5 132 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms