RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 P2RX2Q9UBL9 471 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 SLC7A8Q9UHI5 535 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 TCFL5Q9UL49 500 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 RRP15Q9Y3B9 282 aaKnown RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 SNX13Q9Y5W8 968 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 DMXL2Q8TDJ6 3036 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 ASPMQ8IZT6 3477 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 SEC16AO15027 2179 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 OR6C76A6NM76 312 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 CDRT15L2A8MXV6 281 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.23□□□□□ -0.29
SKA1-202ENST00000398452 PEX12O00623 359 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 ASNA1O43681 348 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 SLC28A2O43868 658 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 DXOO77932 396 aaKnown RBP13.23□□□□□ -0.29
SKA1-202ENST00000398452 CAPNS1P04632 268 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 OR12D1P0DN82 309 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 NR2F1P10589 423 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 LIPCP11150 499 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 ETFAP13804 333 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 MMP11P24347 488 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 SSTR4P31391 388 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 OTX2P32243 289 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 SOX11P35716 441 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 RPS26P62854 115 aaKnown RBP13.23□□□□□ -0.29
SKA1-202ENST00000398452 EEF1A2Q05639 463 aaKnown RBP13.23□□□□□ -0.29
SKA1-202ENST00000398452 FUT7Q11130 342 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 RTP5Q14D33 572 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 VMACQ2NL98 169 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 COL28A1Q2UY09 1125 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 GLYATQ6IB77 296 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 MFSD12Q6NUT3 480 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 TMEM205Q6UW68 189 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 SLC44A2Q8IWA5 706 aaPredicted RBP13.23□□□□□ -0.29
SKA1-202ENST00000398452 METTL25Q8N6Q8 603 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 COX18Q8N8Q8 333 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 FAM156AQ8NDB6 213 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 FBXO30Q8TB52 745 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 SLC2A12Q8TD20 617 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 GPR151Q8TDV0 419 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 PTPMT1Q8WUK0 201 aaPredicted RBP13.23□□□□□ -0.29
SKA1-202ENST00000398452 FIG4Q92562 907 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 POP5Q969H6 163 aaKnown RBP13.23□□□□□ -0.29
SKA1-202ENST00000398452 NACC2Q96BF6 587 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 NSMCE2Q96MF7 247 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 ZNF583Q96ND8 569 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 SPRY4Q9C004 299 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 TMEM38AQ9H6F2 299 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 EPS8L2Q9H6S3 715 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 Q9N2J8 555 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 GPATCH2Q9NW75 528 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 CD300AQ9UGN4 299 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 EGFL7Q9UHF1 273 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 ERVK-11Q9UQG0 969 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 LIPT1Q9Y234 373 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 POMPQ9Y244 141 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 CLDN16Q9Y5I7 305 aa13.23□□□□□ -0.29
SKA1-202ENST00000398452 HEMK1Q9Y5R4 338 aaPredicted RBP13.23□□□□□ -0.29
SKA1-202ENST00000398452 DSPP15924 2871 aaKnown RBP13.23□□□□□ -0.29
SKA1-202ENST00000398452 SAGE2PA6NJ88 616 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 CXCR6O00574 342 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 CNOT3O75175 753 aaKnown RBP13.22□□□□□ -0.29
SKA1-202ENST00000398452 PDE9AO76083 593 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 CBX7O95931 251 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 AK1P00568 194 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 IFNA14P01570 189 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 CRISP3P54108 245 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 DCAF7P61962 342 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 CDK6Q00534 326 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 MGAT2Q10469 447 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 SCARB2Q14108 478 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 VEZF1Q14119 521 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 EXT1Q16394 746 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 GPAT3Q53EU6 434 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 COX20Q5RI15 118 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 FHL5Q5TD97 284 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 DGAT2L6Q6ZPD8 337 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 SPATA24Q86W54 205 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 CALHM3Q86XJ0 350 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 LGI4Q8N135 537 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 HORMAD2Q8N7B1 307 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 HIPK4Q8NE63 616 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 B3GNT7Q8NFL0 401 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 OR5L2Q8NGL0 311 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 OR1N1Q8NGS0 311 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 MIPOL1Q8TD10 442 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 SLC26A7Q8TE54 656 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 VMP1Q96GC9 406 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 RSRC1Q96IZ7 334 aaKnown RBP13.22□□□□□ -0.29
SKA1-202ENST00000398452 IP6K3Q96PC2 410 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 OR7D2Q96RA2 312 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 GAL3ST4Q96RP7 486 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 STACQ99469 402 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 TRIM4Q9C037 500 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 PIGUQ9H490 435 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 ANKRA2Q9H9E1 313 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 FOLH1BQ9HBA9 442 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 ACTR3BQ9P1U1 418 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 ZNF639Q9UID6 485 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 MRTO4Q9UKD2 239 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms