RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 C6orf141Q5SZD1 244 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 CFAP77Q6ZQR2 320 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 BRI3BPQ8WY22 251 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 FOXJ1Q92949 421 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 LRR1Q96L50 414 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 C5AR1P21730 350 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 DAP3P51398 398 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 NPRL3Q12980 569 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 TDGQ13569 410 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 GRM7Q14831 915 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 NNATQ16517 81 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 FAM43BQ6ZT52 329 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 HAVCR2Q8TDQ0 301 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 LIN37Q96GY3 246 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 ACTRT3Q9BYD9 372 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 SEC14L5O43304 696 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 SYT7O43581 403 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 SNAP29O95721 258 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 PNMTP11086 282 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 NSDHLQ15738 373 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 DNAJA3Q96EY1 480 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 SPIN2AQ99865 258 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 SPIN2BQ9BPZ2 258 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 POLE4Q9NR33 117 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 EEF1E1-BLOC1S5C9J1V9 151 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 ANHXE9PGG2 379 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF217O75362 1048 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 TMEM225BP0DP42 221 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF169Q14929 603 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 XKR5Q6UX68 686 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 TEX26Q8N6G2 289 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 MTHFD2LQ9H903 347 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 PCTPQ9UKL6 214 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 CCDC88AQ3V6T2 1871 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 C17orf113A0A1B0GUU1 675 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 A0A1W2PQU0 124 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 IGLON5A6NGN9 336 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 PIRO00625 290 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 TGM5O43548 720 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 FECHP22830 423 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 DPY19L4Q7Z388 723 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 GPR149Q86SP6 731 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 PQLC3Q8N755 202 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC41A3Q96GZ6 507 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 CASD1Q96PB1 797 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC6A16Q9GZN6 736 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF395Q9H8N7 513 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 LMO7Q8WWI1 1683 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 TSPAN15O95858 294 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 FAM198BQ6UWH4 519 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 WDR53Q7Z5U6 358 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 OR5T1Q8NG75 326 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 PPP1R35Q8TAP8 253 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 MSI2Q96DH6 328 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF317Q96PQ6 595 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 PEBP4Q96S96 227 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 TSPAN10Q9H1Z9 355 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 ACOT13Q9NPJ3 140 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 C14orf119Q9NWQ9 140 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 ATXN7L1Q9ULK2 861 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 IFNA17P01571 189 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 CSNK2A1P68400 391 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 C14orf80Q86SX3 495 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 CSNK2A3Q8NEV1 391 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 FAM118AQ9NWS6 357 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 B3GNT2Q9NY97 397 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 NENFQ9UMX5 172 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 A6NIZ1 184 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 AMY2AP04746 511 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC6A8P48029 635 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 RAP1BP61224 184 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 RAP1AP62834 184 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 EEF1A1P5Q5VTE0 462 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 GOLM1Q8NBJ4 401 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 HUS1BQ8NHY5 278 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 CHFRQ96EP1 664 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 MGLLQ99685 303 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 C6P13671 934 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 CDKN2CP42773 168 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 FIGNL1Q6PIW4 674 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF619Q8N2I2 560 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 TSACCQ96A04 125 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 MRGPRX2Q96LB1 330 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF681Q96N22 645 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 F2RL3Q96RI0 385 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 C7orf50Q9BRJ6 194 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 D6RAR5 112 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 ARHGEF15O94989 841 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 GCH1P30793 250 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 HOXA9P31269 272 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 TAS2R31P59538 309 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 KIAA0907Q7Z7F0 614 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 S100A7AQ86SG5 101 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 RELL1Q8IUW5 271 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 SCML4Q8N228 414 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 PLD6Q8N2A8 252 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 NPLOC4Q8TAT6 608 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 RNF128Q8TEB7 428 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 PEX11GQ96HA9 241 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 TP53TG5Q9Y2B4 290 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms