RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 NIPAL3Q6P499 406 aa11.91□□□□□ -0.5
VPS13A-204ENST00000376634 ZNF681Q96N22 645 aa11.91□□□□□ -0.5
VPS13A-204ENST00000376634 DPCDQ9BVM2 203 aaPredicted RBP11.91□□□□□ -0.5
VPS13A-204ENST00000376634 PAQR5Q9NXK6 330 aaPredicted RBP11.91□□□□□ -0.5
VPS13A-204ENST00000376634 J3KR12 359 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 EMC8O43402 210 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 GPR4P46093 362 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 AGTR2P50052 363 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 RAB5CP51148 216 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 TAS2R20P59543 309 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 CNIH3Q8TBE1 160 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 WNT6Q9Y6F9 365 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 PPP1R11O60927 126 aaPredicted RBP11.9□□□□□ -0.5
VPS13A-204ENST00000376634 HPRP00739 348 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 EPHA1P21709 976 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 MARVELD2Q8N4S9 558 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 ZUFSPQ96AP4 578 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 RADILQ96JH8 1075 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 PYCR1P32322 319 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 PTH2RP49190 550 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 RPS15P62841 145 aaKnown RBP11.9□□□□□ -0.5
VPS13A-204ENST00000376634 DYRK1AQ13627 763 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 PPA1Q15181 289 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 AAK1Q2M2I8 961 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 TMEM236Q5W0B7 351 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 LRFN4Q6PJG9 635 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 RNF128Q8TEB7 428 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 SLCO2A1Q92959 643 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 CXorf49A8MYA2 514 aaPredicted RBP11.9□□□□□ -0.5
VPS13A-204ENST00000376634 PAHP00439 452 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 PRKAR1BP31321 381 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 ARSFP54793 590 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 ZNF33AQ06730 810 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 APOFQ13790 326 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 SMIM15Q7Z3B0 74 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 CDC6Q99741 560 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 CDH20Q9HBT6 801 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 PREBQ9HCU5 417 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 FAIMQ9NVQ4 179 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 ATXN7L1Q9ULK2 861 aaPredicted RBP11.9□□□□□ -0.5
VPS13A-204ENST00000376634 SCAF4O95104 1147 aaKnown RBP11.9□□□□□ -0.5
VPS13A-204ENST00000376634 TBPL1P62380 186 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 TMEM115Q12893 351 aaPredicted RBP11.9□□□□□ -0.5
VPS13A-204ENST00000376634 PCLAFQ15004 111 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 RABL3Q5HYI8 236 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 ZNF783Q6ZMS7 281 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 ZNF808Q8N4W9 903 aaPredicted RBP11.9□□□□□ -0.5
VPS13A-204ENST00000376634 RPS10P5Q9NQ39 176 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 GFOD1Q9NXC2 390 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 GALPQ9UBC7 116 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 MST1RQ04912 1400 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 MAST2Q6P0Q8 1798 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 TMEM63AO94886 807 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 TIA1P31483 386 aaKnown RBP eCLIP11.9□□□□□ -0.5
VPS13A-204ENST00000376634 FGL2Q14314 439 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 AGAP7PQ5VUJ5 663 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 AGAP6Q5VW22 663 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 TMEM173Q86WV6 379 aaPredicted RBP11.9□□□□□ -0.5
VPS13A-204ENST00000376634 UEVLDQ8IX04 471 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 C3orf58Q8NDZ4 430 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 WDR20Q8TBZ3 569 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 CNTNAP3BQ96NU0 1288 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 AGAP4Q96P64 663 aa11.9□□□□□ -0.5
VPS13A-204ENST00000376634 DNAJB6O75190 326 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 DNAJB5O75953 348 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 PBX2P40425 430 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 ATP4BP51164 291 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 KIAA0319Q5VV43 1072 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 LANCL3Q6ZV70 420 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 TTLL10Q6ZVT0 673 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 GTPBP8Q8N3Z3 284 aaPredicted RBP11.9□□□□□ -0.51
VPS13A-204ENST00000376634 C4orf32Q8N8J7 132 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 C16orf78Q8WTQ4 265 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 SNAPC3Q92966 411 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 SYT3Q9BQG1 590 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 MPDZO75970 2070 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 APBB3O95704 486 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 GABARAPL2P60520 117 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 TDGQ13569 410 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 ZNF423Q2M1K9 1284 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 ATG9BQ674R7 924 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 ZNF572Q7Z3I7 529 aaPredicted RBP11.9□□□□□ -0.51
VPS13A-204ENST00000376634 S100A7AQ86SG5 101 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 OR51A7Q8NH64 312 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 NCDNQ9UBB6 729 aa11.9□□□□□ -0.51
VPS13A-204ENST00000376634 USP2O75604 605 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-204ENST00000376634 F7P08709 466 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-204ENST00000376634 DLX2Q07687 328 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-204ENST00000376634 BMFQ96LC9 184 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 HAO2Q9NYQ3 351 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 ANKRD34BA5PLL1 514 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 TSPAN6O43657 245 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 AMY2AP04746 511 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 PRMT2P55345 433 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 SLC25A11Q02978 314 aaKnown RBP11.89□□□□□ -0.51
VPS13A-204ENST00000376634 LBX2Q6XYB7 198 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 SFXN5Q8TD22 340 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 SCLYQ96I15 445 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 PGCP20142 388 aa11.89□□□□□ -0.51
VPS13A-204ENST00000376634 OTX2P32243 289 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms