RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 OR12D1P0DN82 309 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 PPICP45877 212 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 POLE2P56282 527 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 MFAP5Q13361 173 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 GANABQ14697 944 aaKnown RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 NPTX1Q15818 432 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 FGD3Q5JSP0 725 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 KLHL24Q6TFL4 600 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 VN1R4Q7Z5H5 301 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 SCUBE1Q8IWY4 988 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 OR8J2Q8NGG1 315 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 TTC9Q92623 222 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 SLC47A1Q96FL8 570 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 ZNF764Q96H86 408 aaPredicted RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 PHOX2BQ99453 314 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 BTBD10Q9BSF8 475 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 MFRPQ9BY79 579 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 ATG4BQ9Y4P1 393 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 LOC101059948A0A1B0GTJ6 334 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 MYOCOSA0A1B0GUC4 107 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 GMFGO60234 142 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 TRHRP34981 398 aaPredicted RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 PPIAP62937 165 aaKnown RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 RNF4P78317 190 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 FOXK1P85037 733 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 TIAL1Q01085 375 aaKnown RBP eCLIP8.57□□□□□ -1.04
UPF2-202ENST00000357604 GRB7Q14451 532 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 MFSD13AQ14CX5 517 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 IFI44LQ53G44 452 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 PGAM4Q8N0Y7 254 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 SIRT6Q8N6T7 355 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 TSLPQ969D9 159 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 FBXL20Q96IG2 436 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 CGREF1Q99674 301 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 ZBTB26Q9HCK0 441 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 SLCO1B3Q9NPD5 702 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 PRDM7Q9NQW5 492 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 CAMK2AQ9UQM7 478 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 COL4A2P08572 1712 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 KRT87PA6NCN2 255 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 OR5H15A6NDH6 313 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 WWP2O00308 870 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 PRICKLE3O43900 615 aaPredicted RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 ATP1B1P05026 303 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 TCN1P20061 433 aaPredicted RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 SPINK2P20155 84 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 C17orf67Q0P5P2 114 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 UGT3A2Q3SY77 523 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 ZNF574Q6ZN55 896 aaPredicted RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 KLHL4Q9C0H6 718 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 POLR2J2Q9GZM3 115 aaKnown RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 POLR2J3Q9H1A7 115 aaKnown RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 REEP1Q9H902 201 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 CHCHD3Q9NX63 227 aaKnown RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 ANAPC2Q9UJX6 822 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 C19orf53Q9UNZ5 99 aaPredicted RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 SH2B3Q9UQQ2 575 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 ASNA1O43681 348 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 CREB1P16220 341 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 CNR1P21554 472 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 HACD2Q6Y1H2 254 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 EXD3Q8N9H8 876 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 ATP6V1C2Q8NEY4 427 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 PIGXQ8TBF5 258 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 SENP5Q96HI0 755 aaPredicted RBP8.57□□□□□ -1.04
UPF2-202ENST00000357604 WWTR1Q9GZV5 400 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 NECTIN3Q9NQS3 549 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 CKAP5Q14008 2032 aa8.57□□□□□ -1.04
UPF2-202ENST00000357604 CPA2P48052 419 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 UGT2B15P54855 530 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 FOXA1P55317 472 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 CLDN6P56747 220 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 FOXD4Q12950 439 aaPredicted RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 PRAMEF8Q5VWM4 474 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 PRAMEF7Q5VXH5 474 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 GFRALQ6UXV0 394 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 B4GALNT2Q8NHY0 566 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 NFKBIDQ8NI38 313 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 NUBPLQ8TB37 319 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 CIDECQ96AQ7 238 aaPredicted RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 C8orf44Q96CB5 159 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 CCDC115Q96NT0 180 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 COQ3Q9NZJ6 369 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 MED16Q9Y2X0 877 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 NPFFR2Q9Y5X5 522 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 FABP3P05413 133 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 DRD5P21918 477 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 KCNJ5P48544 419 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 EXOSC7Q15024 291 aaKnown RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 GEMIN6Q8WXD5 167 aaKnown RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 SLC38A4Q969I6 547 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 OMA1Q96E52 524 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 AMDHD1Q96NU7 426 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 TUBD1Q9UJT1 453 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 LHX6Q9UPM6 363 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 HMX2A2RU54 273 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 EIF4E2O60573 245 aaKnown RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 TRIM3O75382 744 aaPredicted RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 PPM1BO75688 479 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 WISP3O95389 354 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms