RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 RNASE12Q5GAN4 147 aaKnown RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 CLVS2Q5SYC1 327 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 IER5LQ5T953 404 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 RGS7BPQ6MZT1 257 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 TPGS1Q6ZTW0 290 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 NLRC3Q7RTR2 1065 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 OAFQ86UD1 273 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 HORMAD2Q8N7B1 307 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 SAMD12Q8N8I0 201 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 C7orf57Q8NEG2 295 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 OR4F15Q8NGB8 312 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 WDR48Q8TAF3 677 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 MRPS31Q92665 395 aaKnown RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 EGLN3Q9H6Z9 239 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 CXorf36Q9H7Y0 433 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 BRF2Q9HAW0 419 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 BEX1Q9HBH7 125 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 BRD7Q9NPI1 651 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 MAN2C1Q9NTJ4 1040 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ZDHHC3Q9NYG2 299 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 HCN3Q9P1Z3 774 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 GULP1Q9UBP9 304 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 SCP2D1Q9UJQ7 156 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 A4GNTQ9UNA3 340 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ZFR2Q9UPR6 939 aaKnown RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 TMEM5Q9Y2B1 443 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 EXOSC1Q9Y3B2 195 aaKnown RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 HRH3Q9Y5N1 445 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 TCRBV16S1A1N1A0A5B0 115 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 GSAPA4D1B5 854 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 TMEM88BA6NKF7 163 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 TEX46H3BTG2 121 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 SAP18O00422 153 aaKnown RBP6.4□□□□□ -1.38
VPS39-202ENST00000348544 ZNF593O00488 134 aaPredicted RBP6.4□□□□□ -1.38
VPS39-202ENST00000348544 SOX30O94993 753 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 CD3GP09693 182 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 ANKRD34CP0C6C1 535 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 HSD3B2P26439 372 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 PITPNBP48739 271 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 ZNF763Q0D2J5 394 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 COX10Q12887 443 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 EIF2B5Q13144 721 aaKnown RBP6.4□□□□□ -1.38
VPS39-202ENST00000348544 CKAP5Q14008 2032 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 MINDY4Q4G0A6 757 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 TNFAIP8L2Q6P589 184 aaPredicted RBP6.4□□□□□ -1.38
VPS39-202ENST00000348544 ATRAIDQ6UW56 229 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 WASH2PQ6VEQ5 465 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 COMMD6Q7Z4G1 85 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 LRRC28Q86X40 367 aaPredicted RBP6.4□□□□□ -1.38
VPS39-202ENST00000348544 SIAH3Q8IW03 269 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 ZNF527Q8NB42 609 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 OR4K5Q8NGD3 323 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 RAB8BQ92930 207 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 PPCDCQ96CD2 204 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 CXorf40BQ96DE9 158 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 CHFRQ96EP1 664 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 SIPA1Q96FS4 1042 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 PDXPQ96GD0 296 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 TMEM19Q96HH6 336 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 RADILQ96JH8 1075 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 UROC1Q96N76 676 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 SECISBP2Q96T21 854 aaKnown RBP6.4□□□□□ -1.38
VPS39-202ENST00000348544 DDOQ99489 341 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 SEPT5Q99719 369 aaPredicted RBP6.4□□□□□ -1.38
VPS39-202ENST00000348544 LDAHQ9H6V9 325 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 METTL17Q9H7H0 456 aaPredicted RBP6.4□□□□□ -1.38
VPS39-202ENST00000348544 WASH6PQ9NQA3 447 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 KLHL42Q9P2K6 505 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 CPNE7Q9UBL6 633 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 POMT2Q9UKY4 750 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 CBLCQ9ULV8 474 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 PADI3Q9ULW8 664 aa6.4□□□□□ -1.38
VPS39-202ENST00000348544 VWA8A3KMH1 1905 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 A0A0U1RQF3 1178 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 TUBAL3A6NHL2 446 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 NPIPB15A6NHN6 443 aaPredicted RBP6.4□□□□□ -1.39
VPS39-202ENST00000348544 ARHGEF33A8MVX0 844 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 A8MXK9 166 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 M0QZ92 97 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 MMP20O60882 483 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 LPLP06858 475 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 NMBP08949 121 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 MPC1LP0DKB6 136 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 HOXB3P14651 431 aaPredicted RBP6.4□□□□□ -1.39
VPS39-202ENST00000348544 CXCL2P19875 107 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 RBMS1P29558 406 aaKnown RBP6.4□□□□□ -1.39
VPS39-202ENST00000348544 SLC11A2P49281 568 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 AP1S2P56377 157 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 OR10A3P58181 314 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 NAE1Q13564 534 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 OPCMLQ14982 345 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 GPR68Q15743 365 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 FAM27D1Q5T7N8 215 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 HBMQ6B0K9 141 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 CD300LDQ6UXZ3 194 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 SLC36A4Q6YBV0 504 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 PRICKLE2Q7Z3G6 844 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 IQCHQ86VS3 1027 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 LSRQ86X29 649 aaPredicted RBP6.4□□□□□ -1.39
VPS39-202ENST00000348544 RASGRP3Q8IV61 690 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms