RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 OR4N2Q8NGD1 307 aa11.77□□□□□ -0.52
SS18-202ENST00000269138 OR5AK3PQ8NH89 298 aa11.77□□□□□ -0.52
SS18-202ENST00000269138 FBXO30Q8TB52 745 aa11.77□□□□□ -0.52
SS18-202ENST00000269138 SLC22A8Q8TCC7 542 aa11.77□□□□□ -0.52
SS18-202ENST00000269138 PNPLA2Q96AD5 504 aa11.77□□□□□ -0.52
SS18-202ENST00000269138 OTUB1Q96FW1 271 aaPredicted RBP11.77□□□□□ -0.52
SS18-202ENST00000269138 CCDC115Q96NT0 180 aa11.77□□□□□ -0.52
SS18-202ENST00000269138 BTBD9Q96Q07 612 aa11.77□□□□□ -0.52
SS18-202ENST00000269138 ELAC2Q9BQ52 826 aaKnown RBP11.77□□□□□ -0.52
SS18-202ENST00000269138 ZCCHC3Q9NUD5 404 aaKnown RBP11.77□□□□□ -0.52
SS18-202ENST00000269138 HPF1Q9NWY4 346 aa11.77□□□□□ -0.52
SS18-202ENST00000269138 FAM120CQ9NX05 1096 aaKnown RBP11.77□□□□□ -0.52
SS18-202ENST00000269138 SPTA1P02549 2419 aa11.77□□□□□ -0.53
SS18-202ENST00000269138 TRAV17A0A0B4J275 112 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 GMNCA6NCL1 334 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 FRG2CA6NGY1 282 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 IL6P05231 212 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 FBXO45P0C2W1 286 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SOAT1P35610 550 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 DCAF7P61962 342 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 PSG6Q00889 435 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 TIGD2Q4W5G0 525 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 ZNF766Q5HY98 468 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 BLOC1S3Q6QNY0 202 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 TAGAPQ8N103 731 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 VPS37AQ8NEZ2 397 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 OR5M3Q8NGP4 307 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SPACA9Q96E40 222 aaPredicted RBP11.76□□□□□ -0.53
SS18-202ENST00000269138 SLC52A3Q9NQ40 469 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SERHLQ9NQF3 203 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 CCDC167Q9P0B6 97 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 MAP10Q9P2G4 905 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 BTNL2Q9UIR0 455 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 PCDHGB4Q9UN71 923 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 TRIM33Q9UPN9 1127 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 PCDHGA10Q9Y5H3 936 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 NPFFR2Q9Y5X5 522 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 KALRNO60229 2985 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 GXYLT2A0PJZ3 443 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 ASPDHA6ND91 283 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 EIF4E1BA6NMX2 242 aaKnown RBP11.76□□□□□ -0.53
SS18-202ENST00000269138 G3V3Y1 287 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 NR5A2O00482 541 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SLC25A12O75746 678 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SORBS2O94875 1100 aaKnown RBP11.76□□□□□ -0.53
SS18-202ENST00000269138 HMGN2P05204 90 aaKnown RBP11.76□□□□□ -0.53
SS18-202ENST00000269138 GSNP06396 782 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SP1P08047 785 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 ACP2P11117 423 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 ABCD3P28288 659 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 MAP3K8P41279 467 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 FBXW4P57775 412 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 PRR5P85299 388 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 GAB1Q13480 694 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 TP53BP2Q13625 1128 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 LASP1Q14847 261 aaKnown RBP11.76□□□□□ -0.53
SS18-202ENST00000269138 VPS26BQ4G0F5 336 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 PRR30Q53SZ7 412 aaPredicted RBP11.76□□□□□ -0.53
SS18-202ENST00000269138 METTL21CQ5VZV1 264 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SLC25A25Q6KCM7 469 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 MFSD12Q6NUT3 480 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 GK5Q6ZS86 529 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 GPALPP1Q8IXQ4 340 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 CPSF7Q8N684 471 aaKnown RBP11.76□□□□□ -0.53
SS18-202ENST00000269138 SLC16A11Q8NCK7 471 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 OR10G3Q8NGC4 313 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SFXN5Q8TD22 340 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 HOXB13Q92826 284 aaPredicted RBP11.76□□□□□ -0.53
SS18-202ENST00000269138 TMBIM1Q969X1 311 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 OMA1Q96E52 524 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 HSPBAP1Q96EW2 488 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SCMH1Q96GD3 660 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 MS4A4EQ96PG1 132 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 LMF2Q9BU23 707 aaKnown RBP11.76□□□□□ -0.53
SS18-202ENST00000269138 NEUROD4Q9HD90 331 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 SLC6A13Q9NSD5 602 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 GPATCH2Q9NW75 528 aa11.76□□□□□ -0.53
SS18-202ENST00000269138 BSNQ9UPA5 3926 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 NUP214P35658 2090 aaPredicted RBP11.75□□□□□ -0.53
SS18-202ENST00000269138 CCDC154A6NI56 674 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 CDK2AP1O14519 115 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 TO15178 435 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 ACOX3O15254 700 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 SUV39H1O43463 412 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 CCL3P10147 92 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 CD46P15529 392 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 CAPN3P20807 821 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 GABRA3P34903 492 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 CASP9P55211 416 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 NRG3P56975 720 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 RPS26P62854 115 aaKnown RBP11.75□□□□□ -0.53
SS18-202ENST00000269138 UBAP2LQ14157 1087 aaKnown RBP11.75□□□□□ -0.53
SS18-202ENST00000269138 RCAN2Q14206 197 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 MAPKAPK3Q16644 382 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 DUSP5Q16690 384 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 EXOSC6Q5RKV6 272 aaKnown RBP11.75□□□□□ -0.53
SS18-202ENST00000269138 SLC2A7Q6PXP3 512 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 RTL4Q6ZR62 310 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 ZNF621Q6ZSS3 439 aa11.75□□□□□ -0.53
SS18-202ENST00000269138 C6orf120Q7Z4R8 191 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms