RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 CDC6Q99741 560 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 SLC29A1Q99808 456 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 FBXO8Q9NRD0 319 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 THSD1Q9NS62 852 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 RXFP3Q9NSD7 469 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 NINQ8N4C6 2090 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 SPEGQ15772 3267 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 DSPPQ9NZW4 1301 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 NME6O75414 186 aaPredicted RBP13.15□□□□□ -0.3
SS18-201ENST00000269137 RASAL1O95294 804 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 H6PDO95479 791 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 ALOX5P09917 674 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 E2F1Q01094 437 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 MC2RQ01718 297 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 DUSP8Q13202 625 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 DUSP7Q16829 419 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 ARHGAP11BQ3KRB8 267 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 NKAIN1Q4KMZ8 207 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 GPAT3Q53EU6 434 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 VWA2Q5GFL6 755 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 ZNF385CQ66K41 422 aaPredicted RBP13.15□□□□□ -0.3
SS18-201ENST00000269137 OR2T5Q6IEZ7 315 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 RBM44Q6ZP01 1051 aaKnown RBP13.15□□□□□ -0.3
SS18-201ENST00000269137 WDR53Q7Z5U6 358 aaPredicted RBP13.15□□□□□ -0.3
SS18-201ENST00000269137 SVOPLQ8N434 492 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 GALNT4Q8N4A0 578 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 CBR4Q8N4T8 237 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 SMYD1Q8NB12 490 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 CHDHQ8NE62 594 aaPredicted RBP13.15□□□□□ -0.3
SS18-201ENST00000269137 PLPP5Q8NEB5 264 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 OR2T29Q8NH02 315 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 SPPL2AQ8TCT8 520 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 CDS1Q92903 461 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 TMBIM1Q969X1 311 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 SLC38A1Q9H2H9 487 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 APMAPQ9HDC9 416 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 BATF3Q9NR55 127 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 ABCG2Q9UNQ0 655 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 SATB2Q9UPW6 733 aa13.15□□□□□ -0.3
SS18-201ENST00000269137 EP300Q09472 2414 aaPredicted RBP13.15□□□□□ -0.3
SS18-201ENST00000269137 COL27A1Q8IZC6 1860 aaPredicted RBP13.15□□□□□ -0.31
SS18-201ENST00000269137 TCRBV16S1A1N1A0A5B0 115 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 A8MVJ9 347 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 SOCS2O14508 198 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 GNGT2O14610 69 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 POLR1CO15160 346 aaPredicted RBP13.14□□□□□ -0.31
SS18-201ENST00000269137 RECKO95980 971 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 AK1P00568 194 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 IFNA16P05015 189 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 KCNJ5P48544 419 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 HSPA13P48723 471 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 EMDP50402 254 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 DCDP81605 110 aaKnown RBP13.14□□□□□ -0.31
SS18-201ENST00000269137 KCNC4Q03721 635 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 ZNF267Q14586 743 aaPredicted RBP13.14□□□□□ -0.31
SS18-201ENST00000269137 MINDY4Q4G0A6 757 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 AP1ARQ63HQ0 302 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 TSEN54Q7Z6J9 526 aaKnown RBP13.14□□□□□ -0.31
SS18-201ENST00000269137 OR7G1Q8NGA0 311 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 GPR32P1Q8NGA4 272 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 APOBEC4Q8WW27 367 aaKnown RBP13.14□□□□□ -0.31
SS18-201ENST00000269137 CLIP3Q96DZ5 547 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 ZNF597Q96LX8 424 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 LMF2Q9BU23 707 aaKnown RBP13.14□□□□□ -0.31
SS18-201ENST00000269137 RSPO3Q9BXY4 272 aaPredicted RBP13.14□□□□□ -0.31
SS18-201ENST00000269137 NDUFAF4Q9P032 175 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 SEC14L3Q9UDX4 400 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 PCDHGA8Q9Y5G5 932 aa13.14□□□□□ -0.31
SS18-201ENST00000269137 HEMK1Q9Y5R4 338 aaPredicted RBP13.14□□□□□ -0.31
SS18-201ENST00000269137 TTC36A6NLP5 189 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 B4E171 279 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 hCG_2039718K7EN88 272 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 PDLIM1O00151 329 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 PRAMEF2O60811 474 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 NKX2-2O95096 273 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 FESP07332 822 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 ZNF23P17027 643 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 ITGA2P17301 1181 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 TSPAN7P41732 249 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 CHRNEQ04844 493 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 MFSD4BQ5TF39 518 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 ZDHHC13Q8IUH4 622 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 PRSS33Q8NF86 280 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 PTPMT1Q8WUK0 201 aaPredicted RBP13.13□□□□□ -0.31
SS18-201ENST00000269137 TSLPQ969D9 159 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 VSTM2LQ96N03 204 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 ZNF347Q96SE7 839 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 VN1R1Q9GZP7 353 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 MTHFD2LQ9H903 347 aaPredicted RBP13.13□□□□□ -0.31
SS18-201ENST00000269137 C14orf105Q9NVL8 296 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 CTSFQ9UBX1 484 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 LRCH1Q9Y2L9 728 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 PCNX2A6NKB5 2137 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 PRAMEF25A6NGN4 478 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 TMX2-CTNND1H3BSU7 103 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 HRKO00198 91 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 AGRPO00253 132 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 CPNE3O75131 537 aaKnown RBP13.13□□□□□ -0.31
SS18-201ENST00000269137 GUSBP08236 651 aa13.13□□□□□ -0.31
SS18-201ENST00000269137 TNNI3P19429 210 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms