RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 OR52P1PQ8NH57 321 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 C9orf43Q8TAL5 461 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF707Q96C28 371 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-201ENST00000253024 MTERF3Q96E29 417 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 LRIG1Q96JA1 1093 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 FYTTD1Q96QD9 318 aaKnown RBP20.06■□□□□ 0.8
TRIM28-201ENST00000253024 NXF2Q9GZY0 626 aaKnown RBP20.06■□□□□ 0.8
TRIM28-201ENST00000253024 CNOT2Q9NZN8 540 aaKnown RBP20.06■□□□□ 0.8
TRIM28-201ENST00000253024 NUFIP1Q9UHK0 495 aaKnown RBP20.06■□□□□ 0.8
TRIM28-201ENST00000253024 SLC13A4Q9UKG4 626 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 V9GYH0 126 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 DSPPQ9NZW4 1301 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 FABP12A6NFH5 140 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 MYL12AP19105 171 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 APEX1P27695 318 aaKnown RBP20.05■□□□□ 0.8
TRIM28-201ENST00000253024 RFX2P48378 723 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 PXNP49023 591 aaPredicted RBP20.05■□□□□ 0.8
TRIM28-201ENST00000253024 HSDL2Q6YN16 418 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 KRT73Q86Y46 540 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 NANOGP1Q8N7R0 232 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 SETD7Q8WTS6 366 aaKnown RBP20.05■□□□□ 0.8
TRIM28-201ENST00000253024 TXNDC15Q96J42 360 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 SAP130Q9H0E3 1048 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 HCN2Q9UL51 889 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 CLEC4AQ9UMR7 237 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 CENPVL1A0A0U1RR11 272 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 LRIT2A6NDA9 550 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 CELP19835 753 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 C2orf27AQ580R0 203 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 ATAD3CQ5T2N8 411 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF517Q6ZMY9 492 aaPredicted RBP20.05■□□□□ 0.8
TRIM28-201ENST00000253024 IKBIPQ70UQ0 350 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 ACOT4Q8N9L9 421 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 PPP1R16AQ96I34 528 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 FAM83CQ9BQN1 747 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 SEMA4GQ9NTN9 838 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 STUB1Q9UNE7 303 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 SLC9A8Q9Y2E8 581 aa20.05■□□□□ 0.8
TRIM28-201ENST00000253024 MDC1Q14676 2089 aaKnown RBP20.05■□□□□ 0.8
TRIM28-201ENST00000253024 SLC9A3R1O14745 358 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 AIFM1O95831 613 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 TAS2R38P59533 333 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 CDC20Q12834 499 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 LARS2Q15031 903 aaKnown RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 ARHGEF6Q15052 776 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 TOR1AIP1Q5JTV8 583 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 HOMEZQ8IX15 550 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 ATP6V1C2Q8NEY4 427 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 OR2A1Q8NGT9 310 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 WDR26Q9H7D7 661 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 N6AMT1Q9Y5N5 214 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 CLCA3PQ9Y6N3 262 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 MPZL2O60487 215 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 MSL3P1P0C860 447 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 AK4P27144 223 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 NTSP30990 170 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 BTN3A2P78410 334 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 FGL2Q14314 439 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 RNASE12Q5GAN4 147 aaKnown RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 METRNLQ641Q3 311 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 SCAIQ8N9R8 606 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 FBXO15Q8NCQ5 510 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF486Q96H40 463 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 MRPS30Q9NP92 439 aaKnown RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 NFKBIL1Q9UBC1 381 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 CRNNQ9UBG3 495 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 ICKQ9UPZ9 632 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 CACNA1CQ13936 2221 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 CASKO14936 926 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 IDH3BO43837 385 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 FGBP02675 491 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 DRD3P35462 400 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 EPHA5P54756 1037 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 SLC9A5Q14940 896 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 IRF4Q15306 451 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 TBRG1Q3YBR2 411 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 PDZK1Q5T2W1 519 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 IL20RBQ6UXL0 311 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 LAPTM4BQ86VI4 370 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 ETFBKMTQ8IXQ9 262 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 FRMD1Q8N878 549 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 FGF13Q92913 245 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF514Q96K75 400 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-201ENST00000253024 GPR34Q9UPC5 381 aa20.04■□□□□ 0.8
TRIM28-201ENST00000253024 PDE9AO76083 593 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 TIE1P35590 1138 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 LIMK1P53667 647 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 AGAP6Q5VW22 663 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 C12orf73Q69YU5 71 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 FAM109BQ6ICB4 259 aaPredicted RBP20.03■□□□□ 0.8
TRIM28-201ENST00000253024 OR14C36Q8NHC7 312 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 AGAP4Q96P64 663 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 GFM1Q96RP9 751 aaKnown RBP20.03■□□□□ 0.8
TRIM28-201ENST00000253024 MENTQ9BUN1 341 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 EPHX3Q9H6B9 360 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 TMEM74BQ9NUR3 256 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 DPP7Q9UHL4 492 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF221Q9UK13 617 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 EIF2S1P05198 315 aaKnown RBP20.03■□□□□ 0.8
TRIM28-201ENST00000253024 GKN3PP0CG01 181 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms